ellmen / pharmokinetics Goto Github PK

Should include support for:

• One model per row
• One protocol per column
• Lines indicating min/max dosage
• Saving figures

We can probably improve the look of the plots. In particular, it would be worth looking at:

• Increasing the default size of the saved figures
• Using seaborn
• Rendering the subscripts as subscripts

This is a big issue and should probably be split into multiple issues for the different classes/methods.

To start with, we are looking for class definitions that support this API:

from pharmokinetics import Model, Protocol, Solution


m1 = Model(dosing=[1,2], peripheral=[[1,2], [3,4]], therapeutic_min=1, therapeutic_max=6)
m2 = Model(dosing=None, peripheral=[[1,2], [3,4]], therapeutic_min=1, therapeutic_max=6)

p1 = Protocol(constant=[(1,3)], spikes=[(4,5), (1, 7)])
p2 = Protocol(constant=[(1,3)], spikes=[(4,5), (1, 6)])

s = Solution(models=[m1,m2], protocols=[p1,p2])
s.solve()
s.plot()
s.save_plot()

We should include the example.py contents as a Usage section in the README. That should be right under Installation (which should be moved to the top).