elliesch / flipnslide Goto Github PK
View Code? Open in Web Editor NEWFlipnSlide: A Python Package for for Preserving Spatial Context when Preprocessing Large Scientific Images
License: MIT License
FlipnSlide: A Python Package for for Preserving Spatial Context when Preprocessing Large Scientific Images
License: MIT License
In Release 1, we've added capability to output a tensorflow eager tensor. This is not GPU enabled, but will take more thought on how to properly enable GPU ready tensors. It additionally brings up the question as to whether we want to make our code more GPU ready for both tensorflow and PyTorch outputs in Release 2.
Add pytorch functionality to dataset.py.
sliding transform
functionAdd Two Examples:
Add unit tests through GitHub workflows.
Test ideas can be added in the comments below this. Enable GitHub Actions, and create unit tests.
Goal: >80% coverage
Tiling
breaks down when an input image has no channels and is of shape (x px, y px).
This can easily be fixed by adding a dimension expansion:
np.expand_dims(instance_masks_20141128, axis=0)
The visualizations also need to be fixed.
Create a file flipnslide.py to run everything from scratch as the main class.
Write now, tiling runs with a choice of tiler. Create flipnslide class to run tiling only using Flip-n-Slide method, without requiring user to choose which type of tiling.
Checklist for publishing package to PyPI:
The readme is currently unpopulated. Add documentation to this, including pip instructions once the repo is packaged and indexed.
Move tiling code into tiling.py
This file needs to offer users three tools:
Outputs should be available in three data formats:
Add several visualization functionalities to viz.py.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.