eegkit / aind-bci-no-movement

A repository for the aind-bci-no-movement experiment

aind-bci-no-movement

• aind-bci-no-movement
  • Deployment
  • Prerequisites
  • Notes on data-schema regeneration

Deployment

To deploy the Bonsai code, run ./bonsai/setup.cmd. This small script will download and regenerate the current bonsai environment (see tutorial for further details.)

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Prerequisites

These should only need to be installed once on a fresh new system, and are not required if simply refreshing the install or deploying to a new folder.

• Windows 10 or 11
• Visual Studio Code (highly recommended for editing code scripts and git commits)
• Git for Windows (highly recommended for cloning and manipulating this repository)
• .NET Framework 4.7.2 Developer Pack (required for intellisense when editing code scripts)
• Visual C++ Redistributable for Visual Studio 2012 (native dependency for OpenCV)
• FTDI CDM Driver 2.12.28 (serial port drivers for HARP devices)
• Spinnaker SDK 1.29.0.5 (device drivers for FLIR cameras)
  • On FLIR website: Download > archive > 1.29.0.5 > SpinnakerSDK_FULL_1.29.0.5_x64.exe
• NI-DAQmx 19.0 (drivers for NI-DAQ devices)

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Notes on data-schema regeneration

1 - Install bonsai.sgen dotnet tool

2 - Run bonsai.sgen targeting the root schema in src/DataSchemas. E.g.:

To regenerate the loggers, use:

bonsai.sgen --schema "src\DataSchemas\bci-no-movement-logging.json" --namespace BciNoMovement.Logging --root BciNoMovementLogging --output "src\Extensions\BciNoMovementLogging.cs" --serializer NewtonsoftJson YamlDotNet
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