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veghp avatar veghp commented on June 8, 2024 1

Thank you very much for bringing attention to this, and providing a solution. It is now part of the dev branch and will be included in the next release.
Reproducible example (for Jupyter):

import dna_features_viewer
from dna_features_viewer import GraphicFeature, GraphicRecord
features=[
    GraphicFeature(start=20, end=500, strand=0, color="#ffcccc",
                   label="Gene 1: start < end"),
    GraphicFeature(start=750, end=600, strand=0, color="orange",
                   label="Gene 4: start > end"),
    GraphicFeature(start=400, end=700, strand=-1, color="#cffccc",
                   label="Gene 2"),
    GraphicFeature(start=600, end=900, strand=+1, color="#ccccff",
                   label="Gene 3")
]
record = GraphicRecord(sequence_length=1000, features=features)
record.plot(figure_width=5)

import bokeh
bokeh.io.output_notebook()
bokeh_figure = record.plot_with_bokeh()
bokeh.plotting.show(bokeh_figure)

from dnafeaturesviewer.

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