edickie / compare_surf_tools

A BrainHack Project to compare thickness outputs from different pipelines run on ABIDEI

compare_surf_tools

A BrainHack Project to compare thickness outputs from different pipelines run on ABIDEI

R package requirements

Some of the scripts here make use of R libraries ggplot2, tidyr and dplyr. The latest versions of these libraries come packaged together inside the "tidyverse" can be installed with:

install.packages(tidyverse)

R markdown

Some of these sciprts are written in rmardown, which can be quickly converted in to html or pdf reports. The libararies for working with R markdown come packaged within the Rstudio IDE, so anybody using it should have them already. Click here for more info on R markdown. We provide the R markdown scripts and also the rendered .pdf reports in this repo.

If not using Rstudio. You will need the following libraries to render the .rmd file into and .html report

install.packages(knitr)
install.packages(rmarkdown)