Multi Atlas - Segmentation Of Cardiac Region And Total Infarct Scar (MA-SOCRATIS) is an unsupervised automatic pipeline that is capable of segmenting ventricular myocardium and scar from late gadolinium enhanced MR images (LGE-MRI) of left ventricle
Would the following be best managed as external dependencies rather than included in this repository? It would keep the repository much smaller and may make it easier to switch to newer versions of dependencies
Is it possible to switch to using relative paths? At present, the hard-coded references to /home/michail in several files might be problematic for others wanting to build and run your code.