Thank you for developing such a useful tool. I'm currently attempting to use spikChIP with human cell line samples and have encountered an error while running the R script (avg.R). The error message is:
mn <- normalize.loess(m,subset=s)
Error in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, :
NA/NaN/Inf in foreign function call (arg 1)
In addition: There were 44 warnings (use warnings() to see them)
All values within the script are greater than 0.1, and there are no NAs, at least.
sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Ubuntu 20.04.6 LTS
Matrix products: default
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] MASS_7.3-60.0.1 affy_1.68.0 Biobase_2.50.0
[4] BiocGenerics_0.36.1
loaded via a namespace (and not attached):
[1] BiocManager_1.30.22 zlibbioc_1.36.0 compiler_4.0.3
[4] affyio_1.60.0 preprocessCore_1.52.1
Could you provide some guidance on resolving this issue? I appreciate your help.