dzjxzyd / unidl4biopep

Benchmark datasets and original codes

Hi there 👋

🔭 I’m currently working on bioactive peptide discovery by employing machine learning & NLP & molecular docking & dynamics simulation

🌱 I’m currently learning NLP, especially focusing on large language model

📫 How to reach me: zhenjiao.at.ksu.edu

😄 Pronouns: He/Him

unidl4biopep's Issues

Some benchmark files missing

Hi @dzjxzyd, my name is Raul Fernandez-Diaz. I am building a ML tool for predicting peptide bioactivities and wanted to benchmark it against UniDL4BioPep as I think it is the current SOTA using the same benchmarks that you reported in your paper. I noticed that the following data sets are missing:

• Training and testing splits from 14. Antibacterial AB
• Testing from 16. Antiviral AV
• Training and testing from 19. antioxidant_FRS

I would really appreciate if you could upload the files with the training and testing data so that I can use the same splits you used.

Thanks beforehand,