Coder Social home page Coder Social logo

Comments (2)

DyogenIBENS avatar DyogenIBENS commented on September 11, 2024

Hello,
Unfortunately Agora is not able to process trees in NEXUS format, maybe treeio in R or ete3 in python are able to transform the format by tagging the characteristics of the nodes.
I'm interesting in a suitable solution if you figure out one.
best regards.

from agora.

Caoyu819 avatar Caoyu819 commented on September 11, 2024

Hi,

Did you fixed the problem to transform the formation of tree file? i'm thinking about to get the gene trees in nhx format, from the newick format which i already have. Should i write a customized script to transform? Or does there already exist some tools or pipelines which can help to do the transformation?

Thanks in advance.

With best regards,
Yu

from agora.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    πŸ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. πŸ“ŠπŸ“ˆπŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❀️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.