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DYOGEN's Projects

agora icon agora

Algorithm For Gene Order Reconstruction in Ancestors

exogean icon exogean

A program for eukaryotic gene identification based on heuristic rules used by human experts

finsurf icon finsurf

FINSURF is a tool designed to analyse lists of sequences variants in the human genome.

finsurf-model-generation icon finsurf-model-generation

code and notebooks related to the training, evaluation, and application of the FINSURF-adjusted prediction model.

fishcomparativeatlas icon fishcomparativeatlas

FishComparativeAtlas is a pipeline to trace the evolution of sister duplicated chromosomes derived from whole genome duplication in teleost genomes.

fusta icon fusta

A FUSE filesystem to browse & edit FASTA files

libsdyogen icon libsdyogen

Library of usual classes and functions written in python and used in the Dyogen team for comparative genomics applications

phyldiag icon phyldiag

From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromosomes unbroken during evolution.

regulus icon regulus

Bioinformatics tools to identify cis-regulatory interactions in vertebrate genomes

scorpios icon scorpios

SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.

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