Comments (1)
Hi Diego,
Thank you for using AGORA and Genomicus.
The only tool that is available is src/misc.compareGenomes.py
. It allows you to draw either dotplot matrices or karyotypes using AGORA results.
You can have a look at closed issues #5 and #18 for more information, or feel free to ask for more help if needed.
regards,
Alexandra
from agora.
Related Issues (20)
- Error when running agora-basic.py HOT 5
- Agora in living sps HOT 1
- Error Running agora-basic.py: "assert oldName not in seen" HOT 5
- Request for Custom Scripts: Rearrangement Breakpoints filtering and Interchromosomal Rearrangement Identification
- Clarification on Identifying Successive Genomes and Synthetic Blocks between Ancestral Nodes and Extant Genomes in PhylDiag HOT 2
- Creating input for analysis HOT 4
- How to locate the support scores of the AGORA adjacency graph for adjacent genes in ancGenome?
- Orthology groups correspond to HOGs? HOT 2
- Agora-generic pipeline seems to be βstuckβ for several days after adding 1 more genome HOT 4
- AssertionError in ALL.reformatGeneFamilies.py HOT 4
- drawKaryotype trouble HOT 2
- Purpose of ENSEMBL.buildProteinTrees HOT 5
- Is it possible to get ancestral nucleotide sequence? HOT 2
- How to merge SCORPiOs HOT 2
- list indices must be integers or slices, not str HOT 10
- assert oldName not in seen HOT 2
- Too more CARs and how to determine the number of chromosomes HOT 2
- how to deal with many CARs HOT 3
- ValueError: max() arg is an empty sequence HOT 2
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