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data_ssgblup

This repository contains data used as examples in the paper entitled "Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in blupf90" from Lourenco et al. (2020)

datasciencecoursera

datasharing

The Leek group guide to data sharing

deepgp

A tool to implement Genomic Prediction Experiments using Deep Learning

deiva

Interactive Visual Analysis of differential gene expression test results

descriptr

Generate descriptive statistics

deseq2

Differential gene expression analysis based on the negative binomial distribution

doseplot

Before there was enrichplot

drp

R package to calculate deregressed proofs, and its reliabilities and weights.

dsdht

Rscripts for Data Science Course at dsdht.wikispaces.com

easygatk

Make GATK pipelines easy...!

easystats

:milky_way: The R easystats-project

epigpu

Search for epistasis, accelerated using graphics cards

epiq

EPIQ - Efficient detection of SNP-SNP epistatic interactions for quantitative traits

faang-methylation

This repo is to collect the FAANG methylation group's code and pipelines

factoextra

Extract and Visualize the Results of Multivariate Data Analyses

fastspar

Rapid and scalable correlation estimation for compositional data

feelnc

FlExible Extraction of LncRNA

genetonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

geomtextpath

Create curved text paths in ggplot2

gget

gget enables efficient querying of genomic databases, such as Ensembl, UniProt, NCBI, directly into a Python or terminal programming environment. It was designed to support genomic data analysis.

gggenomes

A grammar of graphics for comparative genomics

gosling-tutorial

grapple

An R package for Mendelian Randomization

growthmodels

A recopilation of nonlinear growth models used in many branches of science

gwar

A package for GWA from GBLUP models

h2o-tutorials

Tutorials and training material for the H2O Machine Learning Platform

haplonet

hiblup

:surfer: HIBLUP is an Integration of Statistical Methods Under BLUP Framework for Genomic Selection and Prediction

hiv-adami-zheng

Source code for HIV project from Zheng and Adami's lab.