donalbonny Goto Github PK

machinelearning_transcriptomics

maclearn

Materials for 4-day UT CCBB machine learning course

md-cv

markdown cv / résumé built with jekyll

mimicii-mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

minimal-mistakes

:triangular_ruler: Jekyll theme for personal sites, blogs, and portfolios. Two-columns and extremely flexible.

my_wgcna

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

planner-helper

primer-schemes

Primer schemes for real-time genome epidemiology

python-resources

python_learn

quick-sql-cheatsheet

A quick reminder of all SQL queries and examples on how to use them.

r-ecology-lesson

:notebook: Data Carpentry R lessons on ecology. As of March 15, 2017 these lessons are frozen for significant changes in preparation for release.

r-genomics

r-programming

r4ds

R for data science

rna-seq-analysis

RNAseq analysis notes from Tommy Tang

rna-seq-ebook

rna-seq-example

An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)

rnaseq

RNASeq pipeline

rnaseq-1

Tools for RNASeq analysis take file from SRA file to Fastq, run QC, map to genome and find DE genes.

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

samtools-usefulcommands

scrna.seq.course

Analysis of single cell RNA-seq data course

sds348

shell-genomics

shiny

singel_cell_rna_seq

single-cell-rnaseq

sqlqueries

SQL queries I have written for an online bootcamp.