CO2MPAS ALLINONE archive

Ingredients for a pre-populated archive with WinPython+Consoles+Graphviz to run CO2MPAS on Windows.

Building & Packaging

The creation of a new AIO is based on 2 identical folder hierarchies:

the ./Archive/ containing "template files" that should be copied in
the ./co2mpas_AIO/ folder, that is the actual "AIO" to be 7zipped.

The bash-script ./prepare.sh copies those files in their appropriate place and performs various clean-up tasks. Running this script should be the last thing to do before compressing the final archive (see step 4, below).

To build the 2nd AIO folder follow these steps:

The AIO folder is usually created by extracting a previous AIO version, to arrive in this hierarchy of folders and files:
```
./co2mpas_AIO/
  +--Apps/...
  +--CO2MPAS/...
  +--CO2MPAS.vbs
  +--CONSOLE.vbs
  +--INSTALL.vbs
  +--co2mpas-env.bat
  +--README
```
Otherwise, follow the specific instructions for downloading and extracting each application under a separate folder in ./co2mpas_AIO/Apps/, as explained in the sections below.
Install latest co2mpas package with pip command (either from PyPi or locally, if i's a dev release) and run and test the basic commands and procedures to check everything works as planned.
The AIO has its own version in VERSION.txt file, distinct from co2mpas package, which is imprinted in various places, so you you have to modify it before running ./prepare.sh.

The name of the containing folder must also contain the AIO version; since the AIO folder is always named co2mpas_AIO, do run this command once in cmd.exe to arrive to a co2mpas_AIO-X.Y.Z name (and rename the junction in subsequent releases):
```
mklink  /J  C:\co2mpas_AIO-X.Y.Z  C:\Apps\allinone.git\co2mpas_AIO
```
Commit the 2 modified files above.
Execute the ./prepare.sh script from a Bash launched outside of the AIO folder!
Finally, compress the C:\co2mpas_AIO-X.Y.Z folder created above using either the 7zip utility or the Total-Commander+7zip plugin. Use maximum compression. Check the contents of the result 7zip archive are structured like the previous releases.
Deploy release: Make sure release appropriately tagged and signed in git with your private key.
- If "BETA": draft a new pre-release in private co2mpas repo
- If "FINAL": draft a new release in private co2mpas repo with the "announcement email-text" in it. If archive is deemed ok, copy text to public repo and repeat this step; modify issue #8 to announce new release to subscribers of this issue.

Study also old release guidelines:

Apps

Add prog-x.y.z.ver on each app-folder.

WinPython

WinPython is a portable distribution, so certain procedure is needed to maintain it. The instructions below have been updated to reflect `March 2018's release <https://github.com/winpython/winpython/issues/574`_:

Extract the new WinPython in AIO in place of the old one. Or even better, extract it somewhere as a PRISTINE template, and copy it each time you need to to start over the upgrade.
Generate a list of all PRISTINE WinPython packages installed (or the packages from the earlier AIO). Keep this list open (e.g. in a total-commander lister window):
```
pip freeze > $tmp/winpy-3.5.6-pristine.freeze.txt
```
Consult it whenever you need to see if a package is already installed.

Ensure pip upgraded:

## Upgrade PIP
python -m pip install -U pip
"python.exe" -c "from winpython import wppm;dist=wppm.Distribution(r'$WINPYDIR');dist.patch_standard_packages('pip', to_movable=True)"

Download latest get-pypi.dev:

wget https://bootstrap.pypa.io/get-pip.py -O $WINPYDIRBASE/scripts/get-pip.py

Create an empty folder with co2mpas dependencies:

DOWNDIR="$AIODIR/.."
rm -rf "$DOWNDIR"
mkdir -p "$DOWNDIR"

Download in there all CO2MPAS requirements. WARNING: The order of the next 2 steps is accurate!:
```
pip install -r co2mpas.git/requirements/dev.pip  -r ...
```
and copy the last line for pip's output where it lists all installed packages. Then paste them in the following command:
```
pip download -d "$DOWNDIR" ... (--pre)
```

Convert all tgz, zip to Wheels:

pip wheel  --no-dependencies --wheel-dir=$DOWNDIR \
        foo.tgz ...

Download these packages from Python Unofficial:

## co2mpas deps
#
xgboost
pycosat     # Why needed? (https://github.com/JRCSTU/co2mpas/issues/463)
pyYAML

## For wormhole
Twisted (+ constantly, incremental, Automat, hyperlink, zope.interface)  # for wormhole

## Good to have
#
pygit2
OpenCV-...+contrib_opencl....whl

Download extra packages:

pip download -d "$DOWNDIR" \
    magic-wormhole ViTables pipdeptree pip-tools
    ## wormhole deps
    pynacl txtorcon humanize txaio autobahn hkdf spake2 ipaddress pypiwin32
    asn1crypto cryptography pyopenssl pyasn1 pyasn1-modules service-identity
    ## polyvers deps
    flake8 flake8-builtins flake8-mutable coverage pytest-runner pytest-cov spectate con

DELETE packages from Download-dir that already exist in new WinPython (actually move them into some temporary folder, just in case....):

Tip

A usefull regex to extract package-names from an IPython folder-list:

dpacks = !ls $DOWNDIR
todel = [re.search(r'(.+?)-\d', fname).group(1)
        for fname in dpacks
        if fname in winpy_pristine_packnames]

Note that a py & pytest packages might match too many packages when used as a wildcards...

native packages (numpy/pandas/scipy/numexpr/...): MKL preferred!
system packages (pip/conda): irrelevant, generated by docker-image's conda, besides, pip needs pyton -m pip instal ....
co2mpas mistakenly downloaded.

AIO-redundant packages: TOO MANY!! but KEEP:

dill, graphviz, easygui, asteval, doit, openpyxl, future,
pandalone, regex, schema, tqdm, boltons, pykalman, xlwings,
wltp, cachetools, setuptools-git, ddt

Interesting EXISTENT but UPGRADED packages (1 May 2018, latest WinPython):

Flask       1.0.1   <--0.12.2
Pillow      5.1.0   <-- 5.0.0
pytest      3.5.1   <-- 3.5.0
Sphinx      1.7.4   <-- 1.7.2   UPGR
sphinx_rtd-theme    0.2.4   <-- 0.3.0
Tornado     5.0.2   <-- 4.5.3   UPGR
tqdm        4.23.1  <-- 4.19.9  UPGR
urlib3      1.22    <-- 1.22    UPGR
XlsxWriter  1.0.4   <-- 1.0.2   UPGR
xlwings     0.11.7  <-- 0.11.5  UPGR

UNINSTALL packages: - tensorflow: conflicting dependencies: requires: bleach==1.5.0 - some(?) big packages:
```
pip uninstall theano boto3 botocore nltk lasagne  # (DANGEROUS)
```

Finally install all packages in download-dir & co2mpas:

pip install  --find-links "$DOWNDIR" --no-index \
        -r ../co2mpas.git/requirements/dev.pip
pip install co2mpas[sampling]                        (--pre)
cp co2mpas-xxx.whl  ~/packages
co2mpas --version -v

Override from sources (May 2018: still needed?):

pip install git+https://github.com/ankostis/pyreadline@redisplay

6. HOTFIXES:

GitPython: cygpath fix: Copy git/utils.py from: gitpython-developers/GitPython#639

imaplib noop Debug error in https://github.com/python/cpython/blob/master/Lib/imaplib.py#L1217

- l = map(lambda x:'%s: "%s"' % (x[0], x[1][0] and '" "'.join(x[1]) or ''), l)
+ l = map(lambda x:'%s: "%s"' % (x[0], x[1][0] and '" "'.join(str(k) for k in x[1]) or ''), l)

Or even better appply patch.

Add __init__.py files:
```
$WINPYDIRBASE/python-3.5.2.amd64/Lib/site-packages/mpl_toolkits/__init__.py
$WINPYDIRBASE/python-3.6.1.amd64/lib/site-packages/google/__init__.py
$WINPYDIRBASE/python-3.6.1.amd64/lib/site-packages/google/__init__.py
```
to avoid warnings like that:

2017-02-10 15:37:16,032:WARNI:py.warnings: AIOAppsWinPythonpython-3.5.2.amd64libimportlib_bootstrap_external.py:415: ImportWarning: Not importing directory AIOappswinpythonpython-3.5.2.amd64libsite-packagesmpl_toolkits: missing __init__

_warnings.warn(msg.format(portions[0]), ImportWarning)

Add these lines in getpass.py#167 standard-lib for polite Git msg (FIX):

if os.name =='nt':
    raise ValueError("Cannot derive user-name!\n  Is USERNAME env-var empty?")

pandas OpenPYXL usage:

$WINPYDIRBASE/python-3.5.2.amd64/Lib/site-packages/pandas/io/excel.py

     L784:
     - self.book.remove_sheet(self.book.worksheets[0])
     + self.book.remove(self.book.worksheets[0])

to remove warning:

15:47:55:WARNI:py.warnings: AIO\Apps\WinPython\python-3.5.2.amd64\lib\site-packages\openpyxl\workbook\workbook.py:182: DeprecationWarning: Call to deprecated function or class remove_sheet (Use wb.remove(worksheet) or del wb[sheetname]).
def remove_sheet(self, worksheet):

SOCKS: - python/cpython#562 (socks library).

Link socks-errors (socks.py#711):

- except ValueError as ex:
-     raise GeneralProxyError("HTTP proxy server sent invalid response")
+ except ValueError:
+     raise GeneralProxyError("HTTP proxy server sent invalid response") from ex

Link socks-errors (socks.py#719):

- except ValueError:
-     raise HTTPError("HTTP proxy server did not return a valid HTTP status")
+ except ValueError as ex:
+     raise HTTPError(
+         "HTTP proxy server did not return a valid HTTP status") from ex

Link socks-errors (socks.py#806):

- raise ProxyConnectionError(msg, error)
+ raise ProxyConnectionError(msg, error) from error

Link socks-errors (socks.py#817):

- raise GeneralProxyError("Socket error", error)
+ raise GeneralProxyError("Socket error", error) from error

rainbow_logging_handler: move import sys at the top of the file https://github.com/laysakura/rainbow_logging_handler/blob/master/rainbow_logging_handler/__init__.py#L210 See laysakura/rainbow_logging_handler#14
exchangelib: Just close pool; see ecederstrand/exchangelib#160
schedula:

Fix DispatcherAbort cstor, see vinci1it2000/schedula#9

POSIX

Cygwin:

DROPPED before 1.7.x release because git-2.15+, could not install pip instal git:-https://....

Upgrade: - Download recent installer from: https://cygwin.com/install.html - Write its version as cygwin_setup-x86_64-877.ver file next to it. - Run it to get upgrade all installed packages.

Packages to install: - git, git-completion, colordif, patch - make, zip, unzip, bzip2, 7z, dos2unix, rsync, inetutils (telnet), nc - openssh, curl, wget, gnupg - procps, vim, vim-syntax

DOWNGRADE Git to 2.8.3 from timemachine or else pip install git+https://... FAILS if Git-2.12+!

http://ctm.crouchingtigerhiddenfruitbat.org/pub/cygwin/circa/64bit/2017/04/16/142118/index.html

MSYS2:

Under MSYS2 make sure wget curl openssh gnupg procps vim telnet exist after installing:

- ::

pacman -S man git make tar zip p7zip unzip dos2unix rsync

procps inetutils patch gnu-netcat colordiff nano

Ensure ssh config-folder exists in WinUser's home dir (usually /c/Users/<user>/.ssh) because as explained:

OpenSSH does never use the value of $HOME to search for the users configuration files! It always uses the value of the pw_dir field in /etc/passwd as the home directory.

As dictated by Cygwin instructions, we musr modify /etc/nsswitch.conf accordingly:
```
@L7:
- db_home: cygwin desc
+ db_home: /%H
```

Install Git for Windows

MSYS-git after 2.13+ (tested with v2.17.0) is failing simple cmds unless a MSYS2 console is running on the PC. For instance:

$ cd <some-git-repo>
$ git log
fatal: BUG: disabling cancellation: Invalid argument

Read guide at: https://github.com/git-for-windows/git/wiki/Install-inside-MSYS2-proper
Ensure [MSYS2]/etc/pacman.conf patched with mingw-git repo (already included in Archive/MSYS2/ subtree).
Run cmds in the guide.
Finally use the command from OP in: https://stackoverflow.com/questions/40262434/what-are-the-differences-between-msys-git-and-git-for-windows-mingw-w64-x86-64-g):

pacman -S mingw-w64-x86_64-git

Manually Install git-lfs:

Download zip for windows from; https://github.com/git-lfs/git-lfs/releases,
extract and copy git-lfs.exe --. $AIODIR/Apps/Cygwin/usr/bin.

GnuPG:

Download latest Gpg4Win from https://www.gpg4win.org/download.html, install locally, then copy installation folder into $AIODIR/Apps/GunPG/. prepare.sh makes it portable by creating gpgconf.ctl in same dir as gpgconf.exe (https://www.gnupg.org/documentation/manuals/gnupg/gpgv.html)
Execute this command to create $GNUPGHOME/pubring.kbx:
```
gpgconf --check-programs
```

ConsoleZ

Download from: https://github.com/cbucher/console/wiki/Downloads
Copy-paste folder of the extracted zipped-release.
Update ALLINONE-version in Window-title pattern in /Archive/Apps/Console/console.xml or copy the other way round.

clink:

Download stripped-zip from: mridgers/clink#464 (comment) to fix doskey issue on Windows-10.
Update profile folder and merge bat to print console help.

Graphviz

Download from: http://www.graphviz.org/Download_windows.php
Copy-paste folder of the extracted zipped-release.

node.js

For declarative-widgets:

Download and unzip the 7z from: https://nodejs.org/dist/latest/
OR install node.js according to this: https://gist.github.com/massahud/321a52f153e5d8f571be#file-portable-node-js-andnpm-on-windows-md
npm install bower

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