Comments (5)
I cannot reproduce your problem. The database can be loaded without problem on my system. From your error message it looks like the filesystem might be full or you don't have write permission in Cache/DB/ (which is a bit unlikely as you could write the db file itself).
I assume you renamed the file her to *.db.txt, right?
If the problem is not related to the filesystem or permissions, could you let me know which version of OmaStandalone you are using and how you installed it and on which system?
from omastandalone.
Dear Adrian,
Yes, I renamed the db file to .db.txt in order to attach here and I'm using OMA version 2.3.1. However, I've already discovered the problem, which is not an OMA problem or even related to the dataset problem.
Simply there was one directory inside the DB folder. After removing the directory and keep only *.fa files in DB folder, oma database conversion worked as expected.
I'm sorry about this wrong issue reported and thank you very much for your fast feedback.
Best regards!
from omastandalone.
glad you could solve it. Cheers
from omastandalone.
Hi there!
I was having the same problem, but it was not related to permissions problems. Instead, I realized there are some files in Cache/DB folder with .map extension. I erased those files and the program works, so I want to know if the results that I will get are still reliable.
Thank you!
Laura.
from omastandalone.
Hi @luayou
yes, these .map files are auxiliary files that will be regenerated if they are missing.
Cheers Adrian
from omastandalone.
Related Issues (14)
- [Error] Too many mapped files HOT 2
- Error segmentation fault HOT 6
- Virtualenv in installation required? HOT 1
- running OmaStandalone without network access HOT 9
- Error, (in BuildSpeciesTree) range selector out of bounds HOT 2
- OMA standalone vs. OMAmer HOGs HOT 1
- HierarchicalGroups.orthoxml file contains all splicing variants
- How get paralogs genes from OMAStandalone
- Update OMA on dockerhub HOT 1
- Error message "Error, (in LoadSpliceMap) string to parse is too long" HOT 4
- Error, (in EstablishSpliceMap) splicing variant prefix in not uniq HOT 3
- OMA analysis with around 400 proteomes HOT 1
- Species tree reconstruction fails on a viral dataset
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from omastandalone.