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Dessimoz Lab's Projects

alf icon alf

ALF artificial life simulator

archaeal-fusexins icon archaeal-fusexins

Discovery of archaeal Fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins

blogpost-code icon blogpost-code

This repo contains code and notebook associated with various blog posts

edgehog icon edgehog

Infering ancestral synteny with hierarchical orthologous groups

f1000_omaprimer icon f1000_omaprimer

A complementary analysis to "Identifying Orthologs with OMA: A Primer" in which we show how to compare sub-types of orthologs (pairwise vs. HOG vs. OMA Group)

f1000_phylogenetictree icon f1000_phylogenetictree

A tutorial on using OMA Browser and OMA Standalone for phylogenetic species trees reconstruction. Scripts referred to in the tutorial paper can be found here.

f1000_profiling icon f1000_profiling

a short tutorial on using OMA orthology and HOG data to characterize a conserved pathway

fastoma icon fastoma

FastOMA is a scalable software package to infer orthology relationship.

fold_tree icon fold_tree

snakemake pipeline for creating trees from sequence sets

gethogs icon gethogs

A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs

go-handbook icon go-handbook

Electronic exercises (with solutions) to accompany the book chapter "A Gene Ontology Tutorial in Python" by Alex Warwick Vesztrocy and Christophe Dessimoz, in the collection The Gene Ontology Handbook, C Dessimoz and N Skunca Eds, Spring Humana.

hogprof icon hogprof

Phylogenetic profiling with orthology data

iham icon iham

Widget to visualise the evolutionary history of gene families

omamer icon omamer

OMAmer - tree-driven and alignment-free protein assignment to sub-families

omamo icon omamo

OMAMO: orthology-based model organism selection

padi icon padi

files and notebook related to pad1 analysis

pylabeledrf icon pylabeledrf

A package to compute the Robinson Fould distance extended to labeled topologies.

pyoma icon pyoma

Python library to interact with OMA hdf5 files

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