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pharmacogx-1's Introduction

PharmacoGx

R package to perform large-scale pharmacogenomic analysis of datasets stored in InSilicoDB

Dependencies:

Install the R/Bioconductior dependencies:

pp <- c("InSilicoDb", "Biobase", "BiocGenerics", "org.Hs.eg.db", "survival", "survcomp", "genefu", "mRMRe", "WriteXLS") source("http://bioconductor.org/biocLite.R") myrepos <- biocinstallRepos() rr <- biocLite(pkgs=pp, dependencies=TRUE, type="source", destdir=".")

Then download and install the standalone package jetset from: http://www.cbs.dtu.dk/biotools/jetset/current/jetset_2.14.0.tar.gz

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