ddiez / codelink Goto Github PK
View Code? Open in Web Editor NEWAn R package for the manipulation of Codelink microarray data
Home Page: http://bioconductor.org/packages/devel/bioc/html/codelink.html
An R package for the manipulation of Codelink microarray data
Home Page: http://bioconductor.org/packages/devel/bioc/html/codelink.html
Related to https://support.bioconductor.org/p/70161/#70206
Fails due to createWeights().
tmp <- readCodelink("GSM718640.TXT.gz", type = "Raw")
** product: Unknown
** chip size: 54359
** reading file 1 of 1 : GSM718640.TXT.gz
- detected . as decimal symbol.
- sample Name: GSM718640.TXT.gz
** applying flags to MSR spots ...OK
** computing weights ...Error in array(1, dim(object)) : 'dims' cannot be of length 0traceback()
7: array(1, dim(object))
6: createTypeWeights(object, type.weights)
5: createTypeWeights(object, type.weights)
4: createWeights(codelink, type.weights = type.ww, flag.weights = flag.ww)
3: createWeights(codelink, type.weights = type.ww, flag.weights = flag.ww)
2: .readCodelinkRaw(files = files, sample.name = sample.name, flag = flag,
flag.weights = flag.weights, type.weights = type.weights,
dec = dec, type = type, preserve = preserve, verbose = verbose,
file.type = file.type, check = check, fix = fix, old = old)
1: readCodelink("GSM718640.TXT.gz", type = "Raw")
Not specific of codelink package. Improve the annotation packages (or release new ones) by mapping the probe sequences to the latest genome versions. Reuse code for doing the same in Agilent arrays using Biostrings and other Bioc tools.
https://support.bioconductor.org/p/70161/#70206
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.