This repository contains the processing pipeline scripts used for the neonatal dMRI SHARD pipeline of the Developing Human Connectome Project (dHCP).
Dependencies:
Questions and support: [email protected]
dMRI processing pipelines used in the Developing Human Connectome Project
This repository contains the processing pipeline scripts used for the neonatal dMRI SHARD pipeline of the Developing Human Connectome Project (dHCP).
Dependencies:
Questions and support: [email protected]
I think adding the commands for the registration and composite warp creation would be good.
Rigid alignment to high-resolution structural (T2-weighted) space using normalised mutual information (NMI) based registration with FSL Flirt 8on the mean b=1000 s/mm2 shell. This transformation is combined with a non-linear registration9 of the T2w volume to the 40 weeks template10 to allow transformations between diffusion and atlas spaces. -- https://biomedia.github.io/dHCP-release-notes/dwi-shard.html
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