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customclean

post-processing cleanup of extraneous fmri-pipeline files. Configurable.

daic2hcp

tool for projecting preprocessed volumetric MR data from the DAIC onto HCP grayordinates

data-processing-handbook

readthedocs for DCAN Labs' data processing handbook

dcan-hcp

The DCAN Lab's version of the minimal preprocessing pipeline for the Human Connectome Project

dcan-infant-pipeline

The actual pipeline code, based on hcp, for human infants

dcan-labs-website

This repository contains the code for DCAN's website

dcan-macaque-pipeline

The actual pipeline code, based on hcp, for non-human-primates - sp macaques.

dcan-nn-unet

Utility programs created for using nn-UNet on ABCD data.

dcan_bold_processing

functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines

dcan_rtd

dcm2bids

Fork of Dcm2Bids, fixed for reconstructed GE and Philips Series Numbers

dicom-harpooner

A graphical tool to collect and transfer dicoms across servers.

dutools

A Collection of Tools and Resources Used in Server/Disk Management

exampleconfig

Example configuration for prototyping a Swipes for Science app

executivesummary

quality control images / html viewer for the dcan-fmri-pipelines

external-software

Tools needed for the DCAN Labs pipelines that we didn't write.

faimed3d

Extension to fastai for volumetric medical data

file-mapper

An easy tool to copy/move/symlink files from one directory to the other!

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

functional-random-forest

Functional Analysis with Random Forests

gan-mri

Code repository for Frontiers article 'Generative Adversarial Networks for Image-to-Image Translation on Multi-Contrast MR Images - A Comparison of CycleGAN and UNIT'

hbcd-made

HBCD branch of the MADE pipeline for EEG preprocessing

hbcd_mrs_to_nii_conversion

heudiconv-helper

ili-reliability-wrapper

perform split-halves analysis of ILI computations from resting state data

infant-abcd-bids-pipeline

Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

infant_precision_mapping

intended-fors

This script updates the intended for fields in the fmap.json

internal-tools

Tools written by DCAN Labs and used, in common, by the DCAN pipelines.

lab2im

Library for generating images by sampling a GMM conditioned on label maps