davidalexandermoe / kidney-tumor-detection-end-to-end

Kidney disease classification using a custom VGG-16 CNN, experiments and model monitoring via MLFlow, Pipeline automation with DVC, and Deployment on AWS.

Kidney-Tumor-Detection-End-To-End

End to End Kidney disease classification using Deep Learning, MLFlow, DVC, and Deployment on AWS

Workflows

1. Update config.yaml
2. Update params.yaml
3. Update the entity
4. Update the configuration manager in src config
5. Update the components
6. Update the pipeline
7. Update the main.py
8. Update the dvc.yaml
9. app.py

MLFlow Model Monitoring Preview

How to run?

STEPS:

Clone the repository

https://github.com/DavidAlexanderMoe/Kidney-Tumor-Detection-End-To-End

STEP 01- Create a conda environment after opening the repository

conda create -n cnnkidney python=3.8 -y

conda activate cnnkidney

STEP 02- install the requirements

pip install -r requirements.txt

# Finally run the following command
python app.py

Now, open up your local host and port.

MLflow

• Documentation

cmd

• mlflow ui

dagshub

dagshub

Run this to export as env variables:

export MLFLOW_TRACKING_URI=https://dagshub.com/DavidAlexanderMoe/Kidney-Tumor-Detection-End-To-End.mlflow

export MLFLOW_TRACKING_USERNAME=DavidAlexanderMoe 

export MLFLOW_TRACKING_PASSWORD=...

DVC cmd

1. dvc init
2. dvc repro
3. dvc dag

About MLflow & DVC

MLflow

• Its Production Grade
• Trace all of your experiments
• Logging & tagging your model

DVC

• Its very lightweight for POC only
• lite weight experiments tracker
• It can perform Orchestration (Creating Pipelines)

AWS-CICD-Deployment-with-Github-Actions

1. Login to AWS console.

2. Create IAM user for deployment

#with specific access

1. EC2 access: It is virtual machine

2. ECR: Elastic Container registry to save your docker image in aws


#Description: About the deployment

1. Build docker image of the source code

2. Push your docker image to ECR

3. Launch Your EC2 

4. Pull Your image from ECR in EC2

5. Lauch your docker image in EC2

#Policy:

1. AmazonEC2ContainerRegistryFullAccess

2. AmazonEC2FullAccess

3. Create ECR repo to store/save docker image

- Save the URI: 406660890134.dkr.ecr.us-east-1.amazonaws.com/kidney

4. Create EC2 machine (Ubuntu)

5. Open EC2 and Install docker in EC2 Machine:

#optional

sudo apt-get update -y

sudo apt-get upgrade

#required

curl -fsSL https://get.docker.com -o get-docker.sh

sudo sh get-docker.sh

sudo usermod -aG docker ubuntu

newgrp docker

6. Configure EC2 as self-hosted runner:

setting>actions>runner>new self hosted runner> choose os> then run command one by one

7. Setup github secrets:

AWS_ACCESS_KEY_ID=

AWS_SECRET_ACCESS_KEY=

AWS_REGION = us-east-1

AWS_ECR_LOGIN_URI = demo>>  566373416292.dkr.ecr.ap-south-1.amazonaws.com

ECR_REPOSITORY_NAME = simple-app