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David Augustin's Projects

chi icon chi

Chi is an open source Python package which is designed for treatment response modelling.

erlotinibgefitinib icon erlotinibgefitinib

In this project the PKPD properties of Erlotinib and Gefitinib are investigated.

filter-inference icon filter-inference

This GitHub repository serves as documentation and reproduction source for our article: Augustin D, Lambert B, Wang K, Walz A-C, Robinson M, Gavaghan D (2023) Filter inference: A scalable nonlinear mixed effects inference approach for snapshot time series data. PLoS Comput Biol 19(5): e1011135.

ipa icon ipa

This repository is the exploratory phase of my model identifiability project

mipd-warfarin icon mipd-warfarin

This GitHub repository serves as documentation and reproduction source for our article: Augustin D, Lambert B, Robinson M, Wang K, Gavaghan D (2023) Simulating clinical trials for model-informed precision dosing: Using warfarin treatment as a use case.

oxthesis icon oxthesis

LaTeX template for an Oxford University thesis

pam icon pam

This GitHub repository serves as documentation and reproduction source for the results published on bioRxiv.

pints icon pints

Probabilistic Inference on Noisy Time Series

software-outputs icon software-outputs

A collection of software written and contributed to by SABS-R3 students

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