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Hey! I'm Daren. Welcome to my GitHub profile!


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Background

Ph.D., Quantitative Biology (Evolutionary Biology, Genetics, Genomics, & Bioinformatics) from University of Texas, Arlington.

Main academic interest: Convergent, adaptive evolution of vertebrates using cutting-edge genomics approaches.

Currently a postdoctoral fellow in the Edwards lab at Harvard University.

Previously a graduate student studying in the Castoe lab at UT-Arlington.


Genomic Analysis Toolkit

Genome Sequencing, Assembly, & Annotation, RAD-seq, RNA-seq, ATAC-seq, Hi-C, and more!


Coding Languages

Shell Script  R  Python  Git  Markdown 

Badge Sources: Awesome Badges - https://github.com/Envoy-VC/awesome-badges and custom badges constructed using https://shields.io/

Daren Card's Projects

jekyll-now icon jekyll-now

Modified version of Barry Clark's Jekyll Now website theme for use in Software Carpentry workshop

markdown-badges icon markdown-badges

Badges for your personal developer branding, profile, and projects.

ngsanalysis icon ngsanalysis

Various scripts and tools for next-generation sequencing analysis.

nhminformatics icon nhminformatics

Informatically assessing natural history museum growth and activity

phylotools icon phylotools

Various useful scripts for phylogenetic analyses.

radis icon radis

Pipeline for performing in-silico RADseq experiments

radpipe icon radpipe

Daren's RADseq pipeline. Currently in development.

radseq icon radseq

Python scripts for parsing/analyses of RAD-seq data

reptile-phylogenomics icon reptile-phylogenomics

Data accompanying Card et al. Genome evolution and the future of phylogenomics of non-avian reptiles.

resume_template icon resume_template

Resume template in R/RMarkdown LaTeX offering style(Friggeri)-content(yaml) separation

shell-novice icon shell-novice

Software Carpentry introduction to the shell for novices.

simpletools icon simpletools

A suite of simple bioinformatic & data management tools for various purposes.

solpar icon solpar

Genomic and annotation data for Solenodon paradoxus solPar1 genome

super-deduper icon super-deduper

An application to remove PCR duplicates from high throughput sequencing runs.

text2qti icon text2qti

Create quizzes in QTI format for Canvas from Markdown-based plain text

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