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matplotlib

matplotlib: plotting with Python

matplotlibrc

some example matplotlibrc files, and a script display their effects

metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

metaseq-biotrac56

Materials for the metaseq presentation at NIH FAES Bio-Trac 56 (http://www.biotrac.com/pages/Tracs/Trac56.html)

metaseq-example-data

Example data for metaseq

nihcloudlabaws

Documentation and tutorials on using AWS for biomedical research

ontologization

Wrapper for Ontologizer gene ontology analysis tool, with manipulation and display of downstream results

pharmacogenomics_prediction_pipeline_p3

pipeline-example

example ruffus pipeline

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

pytrackhub

Python module that will allow users to generate trackhub's for UCSC Genome Browser

rdbio-scripts

Unorganized collection of bioinformatics scripts and utilities

rsconnect

Publish Shiny Applications, RMarkdown Documents, Jupyter Notebooks, Plumber APIs, and more

scurgen

A tool for exploring genomic data with space filling curves

seqprint

pretty-print genomic sequences

shiny-fet

Shiny app for visualizing the results of a Fisher's exact test

simplesnakemaketutorial

sphinxdoc-test

experimenting with the best way to push sphinx-generated docs to gh-pages

sphinxleash

Lightweight framework for programatically generating Sphinx docs.

trackhub

create, manage, and upload track hubs for use in the UCSC genome browser

trackhub-demo

ucscsession

Python package for managing sessions in the UCSC Genome Browser.

vim-python-pep8-indent

A nicer Python indentation style for vim.

vogt-particle-tracking

Code to reproduce analysis from Vogt et al 2019 Nature Communications

zenburn.nvim

Zenburn for the modern age