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Collection of notebooks used to demonstrate some Pangeo tools on HPC

License: GNU General Public License v3.0

Jupyter Notebook 98.71% Shell 1.29%

c3dis-2019-pangeo's Introduction

c3dis-2019-pangeo

A set of notebooks demonstrating recent functionality provided by the libraries promulgated by the Pangeo community

To setup and use these notebooks from HPC (at Pawsey/CSIRO) there are some helper scripts and config files.

More details guide available here: http://pangeo.io/setup_guides/hpc.html

TL;DR version:

git clone https://github.com/pbranson/c3dis-2019-pangeo.git
cd c3dis-2019-pangeo
conda env create –f environment.yaml
conda activate pyAODN
cp jobqueue.yaml ~/.config/dask/
sbatch start_pangeo.sh
ssh -N -l pbranson -L 8888:z043:8888 zeus.pawsey.org.au

The correct format for the last line will be printed to the job output file pangeo-######.out, along with the security token to login to the jupyter server.

Acknowledgements

Most of these examples are adapted from others work, in particular @scottyhq ESIP-Tech-Dive, @martindurant, @rabernat, @shoyer and @andersy005 just to name a few!

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