Cristina Sotomayor Vivas ([email protected])
This document contains the final project for the "Introduction to RNA-Seq" module, part of the Bioinformatics and Statistics II class given at LCG-UNAM in February 2022. The original class material from Dr. Leonardo Collado-Torres can be found here.
In this project, we will use the recount3
R package to download RNA-Seq data from The Cancer Genome Atlas project, obtaining all the BRCA samples. We will then evaluate the quality of the downloaded data, explore the available sample attributes, select a subset of these to build a statistical model, and perform differential expression analysis.