conda-forge / devbio-napari-feedstock

A conda-smithy repository for devbio-napari.

About devbio-napari-feedstock

Feedstock license: BSD-3-Clause

Home: https://github.com/haesleinhuepf/devbio-napari

Package license: BSD-3-Clause

Summary: A bundle of napari plugins useful for 3D+t image processing and analysis for studying developmental biology.

Current build status

All platforms:

Current release info

Name	Downloads	Version	Platforms

Installing devbio-napari

Installing devbio-napari from the conda-forge channel can be achieved by adding conda-forge to your channels with:

conda config --add channels conda-forge
conda config --set channel_priority strict

Once the conda-forge channel has been enabled, devbio-napari can be installed with conda:

conda install devbio-napari

or with mamba:

mamba install devbio-napari

It is possible to list all of the versions of devbio-napari available on your platform with conda:

conda search devbio-napari --channel conda-forge

or with mamba:

mamba search devbio-napari --channel conda-forge

Alternatively, mamba repoquery may provide more information:

# Search all versions available on your platform:
mamba repoquery search devbio-napari --channel conda-forge

# List packages depending on `devbio-napari`:
mamba repoquery whoneeds devbio-napari --channel conda-forge

# List dependencies of `devbio-napari`:
mamba repoquery depends devbio-napari --channel conda-forge

About conda-forge

conda-forge is a community-led conda channel of installable packages. In order to provide high-quality builds, the process has been automated into the conda-forge GitHub organization. The conda-forge organization contains one repository for each of the installable packages. Such a repository is known as a feedstock.

A feedstock is made up of a conda recipe (the instructions on what and how to build the package) and the necessary configurations for automatic building using freely available continuous integration services. Thanks to the awesome service provided by Azure, GitHub, CircleCI, AppVeyor, Drone, and TravisCI it is possible to build and upload installable packages to the conda-forge Anaconda-Cloud channel for Linux, Windows and OSX respectively.

To manage the continuous integration and simplify feedstock maintenance conda-smithy has been developed. Using the conda-forge.yml within this repository, it is possible to re-render all of this feedstock's supporting files (e.g. the CI configuration files) with conda smithy rerender.

For more information please check the conda-forge documentation.

Terminology

feedstock - the conda recipe (raw material), supporting scripts and CI configuration.

conda-smithy - the tool which helps orchestrate the feedstock. Its primary use is in the construction of the CI .yml files and simplify the management of many feedstocks.

conda-forge - the place where the feedstock and smithy live and work to produce the finished article (built conda distributions)

Updating devbio-napari-feedstock

If you would like to improve the devbio-napari recipe or build a new package version, please fork this repository and submit a PR. Upon submission, your changes will be run on the appropriate platforms to give the reviewer an opportunity to confirm that the changes result in a successful build. Once merged, the recipe will be re-built and uploaded automatically to the conda-forge channel, whereupon the built conda packages will be available for everybody to install and use from the conda-forge channel. Note that all branches in the conda-forge/devbio-napari-feedstock are immediately built and any created packages are uploaded, so PRs should be based on branches in forks and branches in the main repository should only be used to build distinct package versions.

In order to produce a uniquely identifiable distribution:

• If the version of a package is not being increased, please add or increase the build/number.
• If the version of a package is being increased, please remember to return the build/number back to 0.

Feedstock Maintainers

• @goanpeca
• @haesleinhuepf
• @jaimergp

devbio-napari-feedstock's Issues

Installing on some windows machines failed with an error mentioning linux

Solution to issue cannot be found in the documentation.

• I checked the documentation.

Issue

Hi @goanpeca @jaimergp ,
CC @kevinyamauchi ,

I recently had issues installing devbio-napari using mamba on two Windows (!) computers of collaborators. Installing version 0.8.1 failed with an error containing:

Encountered problems while solving.
Problem: nothing provides __linux needed by devbio-napari-0.8.1-linux_h41d4057_0

Installing devbio-napari 0.6.0 worked fine. Between these versions, we changed this:
023fcf3...ee6da23

Note: Also on my Windows computer devbio-napari 0.8.1 installs properly. It was not obvious what differentiates their Windows 10 config from mine.

Could you do me a favour and check carefully if these changes were done properly? I'm not so much an expert in these OS-dependent conda-forge-thingies. It meet the collaborators weekly so I could test updates to the conda-forge package on their machines. The issue was reproducible.

Big thanks!

Best,
Robert

Installed packages

-

Environment info

-

installing devbio-napari via conda

Comment:

I ran into this error message when attempting to install the devbio napari plugin via conda:
``ERROR conda.core.link:_execute(730): An error occurred while installing package 'conda-forge::qt-5.12.9-h556501e_6'.
Rolling back transaction: done

LinkError: post-link script failed for package conda-forge::qt-5.12.9-h556501e_6
location of failed script: C:\Users\marye\anaconda3\envs\napari-env\Scripts.qt-post-link.bat
==> script messages <==

==> script output <==
stdout: 1 file(s) copied.

stderr: 'chcp' is not recognized as an internal or external command,
operable program or batch file.
'chcp' is not recognized as an internal or external command,
operable program or batch file.
'chcp' is not recognized as an internal or external command,
operable program or batch file.

return code: 1

()

How do I resolve this error? I'm not experienced in coding and am unsure of interpreting this error. Thank you for your help.