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aesara-feedstock's Introduction

About aesara-suite-feedstock

Feedstock license: BSD-3-Clause

Home: https://github.com/aesara-devs/aesara

Package license: BSD-3-Clause

Summary: An optimizing compiler for evaluating mathematical expressions.

Development: https://github.com/aesara-devs/aesara/

Documentation: https://aesara.readthedocs.io/en/latest/

Current build status

Azure
VariantStatus
linux_64_python3.10.____cpythonpython_implcpython variant
linux_64_python3.11.____cpythonpython_implcpython variant
linux_64_python3.8.____cpythonpython_implcpython variant
linux_64_python3.9.____73_pypypython_implpypy variant
linux_64_python3.9.____cpythonpython_implcpython variant
linux_aarch64_python3.10.____cpythonpython_implcpython variant
linux_aarch64_python3.11.____cpythonpython_implcpython variant
linux_aarch64_python3.8.____cpythonpython_implcpython variant
linux_aarch64_python3.9.____73_pypypython_implpypy variant
linux_aarch64_python3.9.____cpythonpython_implcpython variant
osx_64_python3.10.____cpythonpython_implcpython variant
osx_64_python3.11.____cpythonpython_implcpython variant
osx_64_python3.8.____cpythonpython_implcpython variant
osx_64_python3.9.____73_pypypython_implpypy variant
osx_64_python3.9.____cpythonpython_implcpython variant
osx_arm64_python3.10.____cpython variant
osx_arm64_python3.11.____cpython variant
osx_arm64_python3.8.____cpython variant
osx_arm64_python3.9.____cpython variant
win_64_python3.10.____cpythonpython_implcpython variant
win_64_python3.11.____cpythonpython_implcpython variant
win_64_python3.8.____cpythonpython_implcpython variant
win_64_python3.9.____cpythonpython_implpypy variant

Current release info

Name Downloads Version Platforms
Conda Recipe Conda Downloads Conda Version Conda Platforms
Conda Recipe Conda Downloads Conda Version Conda Platforms

Installing aesara-suite

Installing aesara-suite from the conda-forge channel can be achieved by adding conda-forge to your channels with:

conda config --add channels conda-forge
conda config --set channel_priority strict

Once the conda-forge channel has been enabled, aesara, aesara-base can be installed with conda:

conda install aesara aesara-base

or with mamba:

mamba install aesara aesara-base

It is possible to list all of the versions of aesara available on your platform with conda:

conda search aesara --channel conda-forge

or with mamba:

mamba search aesara --channel conda-forge

Alternatively, mamba repoquery may provide more information:

# Search all versions available on your platform:
mamba repoquery search aesara --channel conda-forge

# List packages depending on `aesara`:
mamba repoquery whoneeds aesara --channel conda-forge

# List dependencies of `aesara`:
mamba repoquery depends aesara --channel conda-forge

About conda-forge

Powered by NumFOCUS

conda-forge is a community-led conda channel of installable packages. In order to provide high-quality builds, the process has been automated into the conda-forge GitHub organization. The conda-forge organization contains one repository for each of the installable packages. Such a repository is known as a feedstock.

A feedstock is made up of a conda recipe (the instructions on what and how to build the package) and the necessary configurations for automatic building using freely available continuous integration services. Thanks to the awesome service provided by Azure, GitHub, CircleCI, AppVeyor, Drone, and TravisCI it is possible to build and upload installable packages to the conda-forge Anaconda-Cloud channel for Linux, Windows and OSX respectively.

To manage the continuous integration and simplify feedstock maintenance conda-smithy has been developed. Using the conda-forge.yml within this repository, it is possible to re-render all of this feedstock's supporting files (e.g. the CI configuration files) with conda smithy rerender.

For more information please check the conda-forge documentation.

Terminology

feedstock - the conda recipe (raw material), supporting scripts and CI configuration.

conda-smithy - the tool which helps orchestrate the feedstock. Its primary use is in the construction of the CI .yml files and simplify the management of many feedstocks.

conda-forge - the place where the feedstock and smithy live and work to produce the finished article (built conda distributions)

Updating aesara-suite-feedstock

If you would like to improve the aesara-suite recipe or build a new package version, please fork this repository and submit a PR. Upon submission, your changes will be run on the appropriate platforms to give the reviewer an opportunity to confirm that the changes result in a successful build. Once merged, the recipe will be re-built and uploaded automatically to the conda-forge channel, whereupon the built conda packages will be available for everybody to install and use from the conda-forge channel. Note that all branches in the conda-forge/aesara-suite-feedstock are immediately built and any created packages are uploaded, so PRs should be based on branches in forks and branches in the main repository should only be used to build distinct package versions.

In order to produce a uniquely identifiable distribution:

  • If the version of a package is not being increased, please add or increase the build/number.
  • If the version of a package is being increased, please remember to return the build/number back to 0.

Feedstock Maintainers

aesara-feedstock's People

Contributors

brandonwillard avatar cf-blacksmithy avatar conda-forge-admin avatar conda-forge-curator[bot] avatar ericmjl avatar github-actions[bot] avatar jeffreyenos avatar maresb avatar ngam avatar ocefpaf avatar regro-cf-autotick-bot avatar ricardov94 avatar twiecki avatar

Stargazers

avatar avatar avatar

Watchers

avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar

Forkers

regro-cf-autotick-bot brandonwillard conda-forge-linter twiecki maresb ngam dhirschfeld anacondarecipes jeffreyenos

aesara-feedstock's Issues

g++ not found during package tests

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

It seems that aesara isn't able to locate the g++ compiler that was installed as a runtime dependency.
At least it reports this in the logs: https://dev.azure.com/conda-forge/feedstock-builds/_build/results?buildId=523596&view=logs&j=d0d954b5-f111-5dc4-4d76-03b6c9d0cf7e&t=841356e0-85bb-57d8-dbbc-852e683d1642&l=1060

Installed packages

Refers to build log on github actions

Environment info

Refers to build log on github actions

Problem: nothing provides package_has_been_revoked needed by gfortran_linux-64-7.2.0-24

I am trying to install aesara via mamba, because conda is so slow that I cannot wait for it.

Whenever I try to install aesara I get the error message:

> mamba install -c conda-forge aesara
Encountered problems while solving.
Problem: nothing provides package_has_been_revoked needed by gfortran_linux-64-7.2.0-24

I do not understand, because

mamba repoquery depends aesara -c conda-forge -t

gives me the dependecy tree and there is nowhere a dependency on the gnu compiler suite 7.2.0. All dependencies are on 7.3.0.

I tried the install into a frech environment with conda itself, but stopped the process after waiting for 30 minutes.

Any ideas?

Thanks a lot!
Christian

Recent builds require NumPy 1.24.2

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

On linux-64 I noticed that the builds for aesara==2.8.12 and aesara==2.8.11=*_1 require NumPy 1.24.2:

$ mamba create --quiet -n aesara-numpy python==3.8.6 aesara==2.8.11=*_1 numpy==1.23.5
Could not solve for environment specs
Encountered problems while solving:
  - package aesara-base-2.8.11-py38h578d9bd_1 requires numpy >=1.24.2,<2.0a0, but none of the providers can be installed

The environment can't be solved, aborting the operation

It looks like there are multiple entries for NumPy in the run requirements in these packages' meta.yaml:

  run:
    - cons
    - etuples
    - filelock
    - logical-unification
    - miniKanren
    - numpy >=1.24.2,<2.0a0
    - numpy>=1.17.0
    - python >=3.8,<3.9.0a0
    - python_abi 3.8.* *_cp38
    - scipy>=0.14
    - setuptools >=48.0.0
    - typing_extensions

Is this expected? It's not clear to me where the requirement for 1.24.2 is coming from.

Installed packages

# packages in environment at /home/jeffreye/miniconda3:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
alsa-lib                  1.2.3.2              h166bdaf_0    conda-forge
ansible                   7.1.0           py310hff52083_0    conda-forge
ansible-core              2.14.1             pyhd8ed1ab_0    conda-forge
anyio                     3.6.2              pyhd8ed1ab_0    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py310h5764c6d_3    conda-forge
arrow-cpp                 11.0.0           ha770c72_9_cpu    conda-forge
astroid                   2.13.3          py310hff52083_0    conda-forge
asttokens                 2.0.5              pyhd8ed1ab_0    conda-forge
attrs                     21.4.0             pyhd8ed1ab_0    conda-forge
autopep8                  1.6.0              pyhd8ed1ab_1    conda-forge
aws-c-auth                0.6.25               haec726b_4    conda-forge
aws-c-cal                 0.5.21               hb6b25a1_1    conda-forge
aws-c-common              0.8.12               h0b41bf4_0    conda-forge
aws-c-compression         0.2.16               hea85486_4    conda-forge
aws-c-event-stream        0.2.20               hddb6542_2    conda-forge
aws-c-http                0.7.5                hdfd1699_3    conda-forge
aws-c-io                  0.13.18              hf4b7f4e_3    conda-forge
aws-c-mqtt                0.8.6                hfdaba90_9    conda-forge
aws-c-s3                  0.2.5                hf4c50b5_5    conda-forge
aws-c-sdkutils            0.1.7                hea85486_4    conda-forge
aws-checksums             0.1.14               hea85486_4    conda-forge
aws-crt-cpp               0.19.8               h30838a0_6    conda-forge
aws-sdk-cpp               1.10.57              hd18c533_7    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
bcrypt                    3.2.2           py310h5764c6d_1    conda-forge
beautifulsoup4            4.11.1             pyha770c72_0    conda-forge
black                     22.10.0         py310hff52083_2    conda-forge
bleach                    5.0.0              pyhd8ed1ab_0    conda-forge
blinker                   1.5                pyhd8ed1ab_0    conda-forge
boa                       0.14.0             pyhd8ed1ab_2    conda-forge
boolean.py                3.7                        py_0    conda-forge
boto                      2.49.0                     py_0    conda-forge
brotlipy                  0.7.0           py310h5764c6d_1005    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2022.12.7            ha878542_0    conda-forge
certifi                   2022.12.7          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1          py310h255011f_3    conda-forge
cfgv                      3.3.1              pyhd8ed1ab_0    conda-forge
chardet                   4.0.0           py310hff52083_3    conda-forge
charset-normalizer        2.0.12             pyhd8ed1ab_0    conda-forge
click                     8.1.3           unix_pyhd8ed1ab_2    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
comm                      0.1.2              pyhd8ed1ab_0    conda-forge
conda                     23.1.0          py310hff52083_0    conda-forge
conda-build               3.23.3          py310hff52083_1    conda-forge
conda-forge-pinning       2023.03.11.00.04.37      hd8ed1ab_0    conda-forge
conda-package-handling    2.0.2              pyh38be061_0    conda-forge
conda-package-streaming   0.7.0              pyhd8ed1ab_1    conda-forge
conda-smithy              3.23.0             pyhd8ed1ab_0    conda-forge
conda-tree                1.1.0              pyhd8ed1ab_0    conda-forge
cryptography              39.0.0          py310h34c0648_0    conda-forge
curl                      7.88.1               hdc1c0ab_0    conda-forge
dataclasses               0.8                pyhc8e2a94_3    conda-forge
dbus                      1.13.6               h48d8840_2    conda-forge
debugpy                   1.6.5           py310heca2aa9_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
deprecated                1.2.13             pyh6c4a22f_0    conda-forge
dill                      0.3.6              pyhd8ed1ab_1    conda-forge
distlib                   0.3.4              pyhd8ed1ab_0    conda-forge
docstring-to-markdown     0.11               pyhd8ed1ab_0    conda-forge
dogpile.cache             1.1.8              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
executing                 0.8.3              pyhd8ed1ab_0    conda-forge
expat                     2.4.8                h27087fc_0    conda-forge
filelock                  3.9.0              pyhd8ed1ab_0    conda-forge
flake8                    6.0.0              pyhd8ed1ab_0    conda-forge
flit-core                 3.7.1              pyhd8ed1ab_0    conda-forge
fmt                       9.1.0                h924138e_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.0               h8e229c2_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.10.4               h0708190_1    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
gflags                    2.2.2             he1b5a44_1004    conda-forge
git                       2.37.3          pl5321h04cb727_0    conda-forge
gitdb                     4.0.10             pyhd8ed1ab_0    conda-forge
gitpython                 3.1.31             pyhd8ed1ab_0    conda-forge
glib                      2.74.1               h6239696_0    conda-forge
glib-tools                2.74.1               h6239696_0    conda-forge
glob2                     0.7                        py_0    conda-forge
glog                      0.6.0                h6f12383_0    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
gst-plugins-base          1.18.5               hf529b03_0    conda-forge
gstreamer                 1.18.5               h76c114f_0    conda-forge
httplib2                  0.21.0             pyhd8ed1ab_0    conda-forge
icu                       69.1                 h9c3ff4c_0    conda-forge
identify                  2.5.0              pyhd8ed1ab_0    conda-forge
idna                      3.3                pyhd8ed1ab_0    conda-forge
importlib-metadata        6.0.0              pyha770c72_0    conda-forge
importlib_resources       5.7.1              pyhd8ed1ab_0    conda-forge
ipykernel                 6.19.4             pyh210e3f2_0    conda-forge
ipython                   8.8.0              pyh41d4057_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                7.7.0              pyhd8ed1ab_0    conda-forge
iso8601                   1.1.0              pyhd8ed1ab_0    conda-forge
isodate                   0.6.1              pyhd8ed1ab_0    conda-forge
isort                     5.11.4             pyhd8ed1ab_1    conda-forge
jedi                      0.18.2             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.1              pyhd8ed1ab_0    conda-forge
jmespath                  1.0.1              pyhd8ed1ab_0    conda-forge
joblib                    1.2.0              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   h166bdaf_1    conda-forge
json5                     0.9.5              pyh9f0ad1d_0    conda-forge
jsonpatch                 1.32               pyhd8ed1ab_0    conda-forge
jsonpointer               2.0                        py_0    conda-forge
jsonschema                4.4.0              pyhd8ed1ab_0    conda-forge
jupyter                   1.0.0           py310hff52083_8    conda-forge
jupyter_client            7.3.0              pyhd8ed1ab_0    conda-forge
jupyter_console           6.4.3              pyhd8ed1ab_0    conda-forge
jupyter_core              5.1.2           py310hff52083_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        1.1.0              pyhd8ed1ab_0    conda-forge
keystoneauth1             5.1.1              pyhd8ed1ab_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.20.1               h81ceb04_0    conda-forge
kubernetes                1.24.3               ha770c72_0    conda-forge
kubernetes-client         1.24.3               h889fc20_0    conda-forge
kubernetes-helm           3.7.1                h519d9b9_0    conda-forge
kubernetes-node           1.24.3               h889fc20_0    conda-forge
kubernetes-server         1.24.3               h889fc20_0    conda-forge
lazy-object-proxy         1.9.0           py310h1fa729e_0    conda-forge
ld_impl_linux-64          2.36.1               hea4e1c9_2    conda-forge
libabseil                 20230125.0      cxx17_hcb278e6_1    conda-forge
libarchive                3.5.2                hed592e5_1    conda-forge
libarrow                  11.0.0           h33598ff_9_cpu    conda-forge
libblas                   3.9.0           16_linux64_openblas    conda-forge
libbrotlicommon           1.0.9                h166bdaf_8    conda-forge
libbrotlidec              1.0.9                h166bdaf_8    conda-forge
libbrotlienc              1.0.9                h166bdaf_8    conda-forge
libcblas                  3.9.0           16_linux64_openblas    conda-forge
libclang                  13.0.1          default_hc23dcda_0    conda-forge
libcrc32c                 1.1.2                h9c3ff4c_0    conda-forge
libcurl                   7.88.1               hdc1c0ab_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.10               h28343ad_4    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 12.1.0              h8d9b700_16    conda-forge
libgfortran-ng            12.2.0              h69a702a_19    conda-forge
libgfortran5              12.2.0              h337968e_19    conda-forge
libglib                   2.74.1               h7a41b64_0    conda-forge
libgomp                   12.1.0              h8d9b700_16    conda-forge
libgoogle-cloud           2.8.0                h3c06191_0    conda-forge
libgrpc                   1.51.1               hcf146ea_3    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
liblapack                 3.9.0           16_linux64_openblas    conda-forge
liblief                   0.12.3               h27087fc_0    conda-forge
libllvm11                 11.1.0               hf817b99_3    conda-forge
libllvm13                 13.0.1               hf817b99_2    conda-forge
libmamba                  1.1.0                h70b1f8a_2    conda-forge
libmambapy                1.1.0           py310h69aa5bf_2    conda-forge
libnghttp2                1.52.0               h61bc06f_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.21          pthreads_h78a6416_3    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpng                    1.6.37               h21135ba_2    conda-forge
libpq                     14.5                 hb675445_5    conda-forge
libprotobuf               3.21.12              h3eb15da_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsolv                   0.7.22               h6239696_0    conda-forge
libssh2                   1.10.0               hf14f497_3    conda-forge
libstdcxx-ng              12.2.0              h46fd767_19    conda-forge
libthrift                 0.18.0               h5e4af38_0    conda-forge
libutf8proc               2.8.0                h166bdaf_0    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxkbcommon              1.0.3                he3ba5ed_0    conda-forge
libxml2                   2.9.12               h885dcf4_1    conda-forge
libzlib                   1.2.13               h166bdaf_4    conda-forge
license-expression        1.2                        py_0    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
lzo                       2.10              h516909a_1000    conda-forge
mamba                     1.1.0           py310h51d5547_2    conda-forge
markdown-it-py            2.2.0              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.1           py310h5764c6d_2    conda-forge
matplotlib-inline         0.1.3              pyhd8ed1ab_0    conda-forge
mccabe                    0.7.0              pyhd8ed1ab_0    conda-forge
mdurl                     0.1.0              pyhd8ed1ab_0    conda-forge
mistune                   2.0.4              pyhd8ed1ab_0    conda-forge
msrest                    0.6.21             pyh44b312d_0    conda-forge
munch                     2.5.0                      py_0    conda-forge
mypy_extensions           0.4.3           py310hff52083_6    conda-forge
mysql-common              8.0.31               h26416b9_0    conda-forge
mysql-libs                8.0.31               hbc51c84_0    conda-forge
nbclient                  0.6.2              pyhd8ed1ab_0    conda-forge
nbconvert                 7.2.7              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.2.7              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.2.7              pyhd8ed1ab_0    conda-forge
nbformat                  5.4.0              pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  h27087fc_1    conda-forge
nest-asyncio              1.5.5              pyhd8ed1ab_0    conda-forge
netifaces                 0.11.0          py310h5764c6d_1    conda-forge
networkx                  3.0                pyhd8ed1ab_0    conda-forge
nodeenv                   1.6.0              pyhd8ed1ab_0    conda-forge
notebook                  6.4.11             pyha770c72_0    conda-forge
nspr                      4.32                 h9c3ff4c_1    conda-forge
nss                       3.77                 h2350873_0    conda-forge
numpy                     1.24.1          py310h08bbf29_0    conda-forge
oauthlib                  3.2.2              pyhd8ed1ab_0    conda-forge
openssl                   3.0.8                h0b41bf4_0    conda-forge
openstacksdk              0.103.0         py310hff52083_0    conda-forge
orc                       1.8.2                hfdbbad2_2    conda-forge
os-service-types          1.7.0              pyh9f0ad1d_0    conda-forge
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pandas                    1.5.2           py310h769672d_0    conda-forge
pandoc                    2.18                 ha770c72_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
paramiko                  2.12.0             pyhd8ed1ab_0    conda-forge
parquet-cpp               1.5.1                         2    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
patch                     2.7.6             h7f98852_1002    conda-forge
patchelf                  0.17.2               h58526e2_0    conda-forge
pathspec                  0.10.1             pyhd8ed1ab_0    conda-forge
pbr                       5.11.0             pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pcre2                     10.37                hc3806b6_1    conda-forge
perl                      5.32.1          2_h7f98852_perl5    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       22.0.4             pyhd8ed1ab_0    conda-forge
pkginfo                   1.9.6              pyhd8ed1ab_0    conda-forge
platformdirs              2.5.1              pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0              pyhd8ed1ab_5    conda-forge
pre-commit                2.21.0          py310hff52083_0    conda-forge
prometheus_client         0.14.1             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.29             pyha770c72_0    conda-forge
prompt_toolkit            3.0.29               hd8ed1ab_0    conda-forge
psutil                    5.9.4           py310h5764c6d_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
py-lief                   0.12.3          py310hd8f1fbe_0    conda-forge
pyarrow                   11.0.0          py310h633f555_9_cpu    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pycodestyle               2.10.0             pyhd8ed1ab_0    conda-forge
pycosat                   0.6.4           py310h5764c6d_1    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pycryptodome              3.16.0          py310h1419917_0    conda-forge
pydocstyle                6.2.3              pyhd8ed1ab_0    conda-forge
pyflakes                  3.0.1              pyhd8ed1ab_0    conda-forge
pygithub                  1.58.0             pyh1a96a4e_0    conda-forge
pygments                  2.11.2             pyhd8ed1ab_0    conda-forge
pyjwt                     2.6.0              pyhd8ed1ab_0    conda-forge
pylint                    2.15.10            pyhd8ed1ab_0    conda-forge
pynacl                    1.5.0           py310h5764c6d_2    conda-forge
pyopenssl                 22.0.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.8              pyhd8ed1ab_0    conda-forge
pyqt                      5.12.3          py310hff52083_8    conda-forge
pyqt-impl                 5.12.3          py310h1f8e252_8    conda-forge
pyqt5-sip                 4.19.18         py310h122e73d_8    conda-forge
pyqtchart                 5.12            py310hfcd6d55_8    conda-forge
pyqtwebengine             5.12.1          py310hfcd6d55_8    conda-forge
pyrsistent                0.19.3          py310h1fa729e_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.10.0          h543edf9_3_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.15.3             pyhd8ed1ab_0    conda-forge
python-libarchive-c       4.0             py310hff52083_2    conda-forge
python-lsp-jsonrpc        1.0.0              pyhd8ed1ab_0    conda-forge
python-lsp-server         1.7.1                hd8ed1ab_0    conda-forge
python-lsp-server-base    1.7.1              pyhd8ed1ab_0    conda-forge
python_abi                3.10                    3_cp310    conda-forge
pytoolconfig              1.2.4              pyhd8ed1ab_0    conda-forge
pytz                      2022.6             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0             py310h5764c6d_5    conda-forge
pyzmq                     24.0.1          py310h330234f_1    conda-forge
qt                        5.12.9               ha98a1a1_5    conda-forge
qtconsole                 5.3.0              pyhd8ed1ab_0    conda-forge
qtconsole-base            5.3.0              pyhd8ed1ab_0    conda-forge
qtpy                      2.1.0              pyhd8ed1ab_0    conda-forge
re2                       2023.02.02           hcb278e6_0    conda-forge
readline                  8.1.2                h0f457ee_0    conda-forge
reproc                    14.2.3               h7f98852_0    conda-forge
reproc-cpp                14.2.3               h9c3ff4c_0    conda-forge
requests                  2.27.1             pyhd8ed1ab_0    conda-forge
requests-oauthlib         1.3.1              pyhd8ed1ab_0    conda-forge
requestsexceptions        1.4.0                      py_0    conda-forge
resolvelib                0.5.4              pyhd8ed1ab_0    conda-forge
rich                      13.3.1             pyhd8ed1ab_0    conda-forge
ripgrep                   13.0.0               h2f28480_2    conda-forge
rope                      1.7.0              pyhd8ed1ab_0    conda-forge
ruamel.yaml               0.17.21         py310h5764c6d_2    conda-forge
ruamel.yaml.clib          0.2.7           py310h1fa729e_1    conda-forge
ruamel_yaml               0.15.80         py310h5764c6d_1008    conda-forge
s2n                       1.3.38               h3358134_0    conda-forge
scrypt                    0.8.18          py310ha302636_4    conda-forge
send2trash                1.8.0              pyhd8ed1ab_0    conda-forge
setuptools                65.6.3             pyhd8ed1ab_0    conda-forge
shyaml                    0.6.2              pyhd3deb0d_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
smmap                     3.0.5              pyh44b312d_0    conda-forge
snappy                    1.1.9                hbd366e4_2    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.1              pyhd8ed1ab_0    conda-forge
sqlite                    3.38.3               h4ff8645_0    conda-forge
stack_data                0.2.0              pyhd8ed1ab_0    conda-forge
stevedore                 4.1.1              pyhd8ed1ab_0    conda-forge
tabulate                  0.8.10             pyhd8ed1ab_0    conda-forge
terminado                 0.17.1             pyh41d4057_0    conda-forge
tinycss2                  1.1.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tomlkit                   0.11.6             pyha770c72_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
tornado                   6.2             py310h5764c6d_1    conda-forge
tqdm                      4.64.0             pyhd8ed1ab_0    conda-forge
traitlets                 5.8.0              pyhd8ed1ab_0    conda-forge
typing                    3.10.0.0           pyhd8ed1ab_0    conda-forge
typing-extensions         4.4.0                hd8ed1ab_0    conda-forge
typing_extensions         4.4.0              pyha770c72_0    conda-forge
tzdata                    2022g                h191b570_0    conda-forge
ujson                     5.7.0           py310heca2aa9_0    conda-forge
ukkonen                   1.0.1           py310hbf28c38_3    conda-forge
urllib3                   1.26.9             pyhd8ed1ab_0    conda-forge
virtualenv                20.16.2         py310hff52083_0    conda-forge
vsts-python-api           0.1.25             pyhd8ed1ab_1    conda-forge
watchgod                  0.8.2              pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
whatthepatch              1.0.4              pyhd8ed1ab_0    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
widgetsnbextension        3.6.1              pyha770c72_0    conda-forge
wrapt                     1.14.1          py310h5764c6d_1    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xz                        5.2.5                h516909a_1    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yaml-cpp                  0.7.0                h27087fc_2    conda-forge
yapf                      0.32.0             pyhd8ed1ab_0    conda-forge
zeromq                    4.3.4                h9c3ff4c_1    conda-forge
zipp                      3.8.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h166bdaf_4    conda-forge
zstandard                 0.19.0          py310hdeb6495_1    conda-forge
zstd                      1.5.2                ha95c52a_0    conda-forge

Environment info

active environment : base
    active env location : /home/jeffreye/miniconda3
            shell level : 5
       user config file : /home/jeffreye/.condarc
 populated config files : /home/jeffreye/.condarc
          conda version : 23.1.0
    conda-build version : 3.23.3
         python version : 3.10.0.final.0
       virtual packages : __archspec=1=x86_64
                          __glibc=2.35=0
                          __linux=5.19.0=0
                          __unix=0=0
       base environment : /home/jeffreye/miniconda3  (writable)
      conda av data dir : /home/jeffreye/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/jeffreye/miniconda3/pkgs
                          /home/jeffreye/.conda/pkgs
       envs directories : /home/jeffreye/miniconda3/envs
                          /home/jeffreye/.conda/envs
               platform : linux-64
             user-agent : conda/23.1.0 requests/2.27.1 CPython/3.10.0 Linux/5.19.0-35-generic ubuntu/22.04.2 glibc/2.35
                UID:GID : 1001:1002
             netrc file : None
           offline mode : False

NumPy compiler warnings on Windows

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

Even fresh, minimal environments on Windows have a broken compiler toolchain, rendering them completely unusable.

This command creates a small environment:

conda create -n aesara-test -c conda-forge python=3.9 aesara -y

Upon import aesara there are lots of errors and warnings:

>>> import aesara
WARN: Could not locate executable g77
WARN: Could not locate executable f77
WARN: Could not locate executable ifort
WARN: Could not locate executable ifl
WARN: Could not locate executable f90
WARN: Could not locate executable DF
WARN: Could not locate executable efl
Using built-in specs.
COLLECT_GCC=C:\Users\osthege\AppData\Local\Continuum\miniconda3\envs\CARenv2\Library\mingw-w64\bin\gfortran.exe
COLLECT_LTO_WRAPPER=C:/Users/osthege/AppData/Local/Continuum/miniconda3/envs/CARenv2/Library/mingw-w64/bin/../lib/gcc/x86_64-w64-mingw32/5.3.0/lto-wrapper.exe
Target: x86_64-w64-mingw32
Configured with: ../gcc-5.3.0/configure --prefix=/mingw64 --with-local-prefix=/mingw64/local --build=x86_64-w64-mingw32 --host=x86_64-w64-mingw32 --target=x86_64-w64-mingw32 --with-native-system-header-dir=/mingw64/x86_64-w64-mingw32/include --libexecdir=/mingw64/lib --with-gxx-include-dir=/mingw64/include/c++/5.3.0 --enable-bootstrap --with-arch=x86-64 --with-tune=generic --enable-languages=c,lto,c++,objc,obj-c++,fortran,ada --enable-shared --enable-static --enable-libatomic --enable-threads=posix --enable-graphite --enable-fully-dynamic-string --enable-libstdcxx-time=yes --disable-libstdcxx-pch --disable-libstdcxx-debug --enable-version-specific-runtime-libs --disable-isl-version-check --enable-lto --enable-libgomp --disable-multilib --enable-checking=release --disable-rpath --disable-win32-registry --disable-nls --disable-werror --disable-symvers --with-libiconv --with-system-zlib --with-gmp=/mingw64 --with-mpfr=/mingw64 --with-mpc=/mingw64 --with-isl=/mingw64 --with-pkgversion='Rev5, Built by MSYS2 project' --with-bugurl=https://sourceforge.net/projects/msys2 --with-gnu-as --with-gnu-ld
Thread model: posix
gcc version 5.3.0 (Rev5, Built by MSYS2 project)
WARNING (aesara.tensor.blas): Using NumPy C-API based implementation for BLAS functions.

At first I thought this was just one environment, but the problem appears in all new environments I create. And I'm running out of non-broken old environments to fall back to 😬

With these broken environments, doing a posterior predictive sampling with a GP is about 100x slower than in non-broken envs.

Installed packages

# packages in environment at C:\Users\osthege\AppData\Local\Continuum\miniconda3\envs\aesara-test:
#
# Name                    Version                   Build  Channel
aesara                    2.5.3            py39h7fcc1c2_0    conda-forge
bzip2                     1.0.8                h8ffe710_4    conda-forge
ca-certificates           2021.10.8            h5b45459_0    conda-forge
cons                      0.4.5              pyhd8ed1ab_0    conda-forge
etuples                   0.3.5              pyhd8ed1ab_0    conda-forge
filelock                  3.6.0              pyhd8ed1ab_0    conda-forge
intel-openmp              2022.0.0          h57928b3_3663    conda-forge
libblas                   3.9.0              13_win64_mkl    conda-forge
libcblas                  3.9.0              13_win64_mkl    conda-forge
libffi                    3.4.2                h8ffe710_5    conda-forge
liblapack                 3.9.0              13_win64_mkl    conda-forge
libpython                 2.1              py39hcbf5309_1    conda-forge
libzlib                   1.2.11            h8ffe710_1014    conda-forge
logical-unification       0.4.5              pyhd8ed1ab_0    conda-forge
m2w64-binutils            2.25.1                        5    conda-forge
m2w64-bzip2               1.0.6                         6    conda-forge
m2w64-crt-git             5.0.0.4636.2595836               2    conda-forge
m2w64-gcc                 5.3.0                         6    conda-forge
m2w64-gcc-ada             5.3.0                         6    conda-forge
m2w64-gcc-fortran         5.3.0                         6    conda-forge
m2w64-gcc-libgfortran     5.3.0                         6    conda-forge
m2w64-gcc-libs            5.3.0                         7    conda-forge
m2w64-gcc-libs-core       5.3.0                         7    conda-forge
m2w64-gcc-objc            5.3.0                         6    conda-forge
m2w64-gmp                 6.1.0                         2    conda-forge
m2w64-headers-git         5.0.0.4636.c0ad18a               2    conda-forge
m2w64-isl                 0.16.1                        2    conda-forge
m2w64-libiconv            1.14                          6    conda-forge
m2w64-libmangle-git       5.0.0.4509.2e5a9a2               2    conda-forge
m2w64-libwinpthread-git   5.0.0.4634.697f757               2    conda-forge
m2w64-make                4.1.2351.a80a8b8               2    conda-forge
m2w64-mpc                 1.0.3                         3    conda-forge
m2w64-mpfr                3.1.4                         4    conda-forge
m2w64-pkg-config          0.29.1                        2    conda-forge
m2w64-toolchain           5.3.0                         7    conda-forge
m2w64-toolchain_win-64    2.4.0                         0    conda-forge
m2w64-tools-git           5.0.0.4592.90b8472               2    conda-forge
m2w64-windows-default-manifest 6.4                           3    conda-forge
m2w64-winpthreads-git     5.0.0.4634.697f757               2    conda-forge
m2w64-zlib                1.2.8                        10    conda-forge
minikanren                1.0.3              pyhd8ed1ab_0    conda-forge
mkl                       2022.0.0           h0e2418a_796    conda-forge
msys2-conda-epoch         20160418                      1    conda-forge
multipledispatch          0.6.0                      py_0    conda-forge
numpy                     1.22.3           py39h6331f09_0    conda-forge
openssl                   3.0.2                h8ffe710_1    conda-forge
pip                       22.0.4             pyhd8ed1ab_0    conda-forge
python                    3.9.12          hcf16a7b_1_cpython    conda-forge
python_abi                3.9                      2_cp39    conda-forge
scipy                     1.7.3            py39hc0c34ad_0    conda-forge
setuptools                61.3.0           py39hcbf5309_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sqlite                    3.37.1               h8ffe710_0    conda-forge
tbb                       2021.5.0             h2d74725_0    conda-forge
tk                        8.6.12               h8ffe710_0    conda-forge
toolz                     0.11.2             pyhd8ed1ab_0    conda-forge
typing_extensions         4.1.1              pyha770c72_0    conda-forge
tzdata                    2022a                h191b570_0    conda-forge
ucrt                      10.0.20348.0         h57928b3_0    conda-forge
vc                        14.2                 hb210afc_6    conda-forge
vs2015_runtime            14.29.30037          h902a5da_6    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
xz                        5.2.5                h62dcd97_1    conda-forge

Environment info

active environment : aesara-test
    active env location : C:\Users\osthege\AppData\Local\Continuum\miniconda3\envs\aesara-test
            shell level : 1
       user config file : C:\Users\osthege\.condarc
 populated config files : C:\Users\osthege\.condarc
          conda version : 4.12.0
    conda-build version : 3.10.9
         python version : 3.7.2.final.0
       virtual packages : __cuda=11.0=0
                          __win=0=0
                          __archspec=1=x86_64
       base environment : C:\Users\osthege\AppData\Local\Continuum\miniconda3  (writable)
      conda av data dir : C:\Users\osthege\AppData\Local\Continuum\miniconda3\etc\conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/win-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/win-64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://repo.anaconda.com/pkgs/msys2/win-64
                          https://repo.anaconda.com/pkgs/msys2/noarch
          package cache : C:\Users\osthege\AppData\Local\Continuum\miniconda3\pkgs
                          C:\Users\osthege\.conda\pkgs
                          C:\Users\osthege\AppData\Local\conda\conda\pkgs
       envs directories : C:\Users\osthege\AppData\Local\Continuum\miniconda3\envs
                          C:\Users\osthege\.conda\envs
                          C:\Users\osthege\AppData\Local\conda\conda\envs
               platform : win-64
             user-agent : conda/4.12.0 requests/2.27.1 CPython/3.7.2 Windows/10 Windows/10.0.19041
          administrator : False
             netrc file : None
           offline mode : False

Add aesara-base package

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

In pymc we have a pymc-base package that does not have requirements on compilers or blas. This would be very useful for aesara too incase I don't want to chose my own computational backend.

Installed packages

foo

Environment info

foo

Why and how should `blas` be added to dependencies

Comment:

Motivated by this comment I'd like to centralize the info regarding BLAS requirements for Aesara.

In order to solve these sorts of errors, the blas package was added as a host dependency in #48 (see also the links inside).

Since Aesara tries to compile with BLAS at runtime, I believe this should instead be a runtime dependency rather than a host dependency.

Unfortunately I don't currently have a very good understanding of the BLAS libraries. The Conda-Forge BLAS docs seem to be written from the perspective of a program which needs to be built using BLAS, rather than a program that relies on dynamic BLAS compilation at runtime.

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