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Correlated pseudo-marginal Metropolis-Hastings using quasi-Newton proposals

Home Page: http://www.johandahlin.com/research/

License: GNU General Public License v3.0

Python 84.87% Shell 0.07% R 14.83% Dockerfile 0.22%
markov-chain-monte-carlo bayesian-inference big-data particle-filters metropolis-hastings machine-learning quasi-newton logistic-regression supervised-learning state-space-models

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pmmh-qn's Issues

errors running the python code

Hi!
having a few errors running the python code-

@_call_aside
File "/home/andrewcz/tutorial-env2/lib/python3.6/site-packages/pkg_resources/init.py", line 3072, in _call_aside
f(*args, **kwargs)
File "/home/andrewcz/tutorial-env2/lib/python3.6/site-packages/pkg_resources/init.py", line 3116, in _initialize_master_working_set
for dist in working_set
File "/home/andrewcz/tutorial-env2/lib/python3.6/site-packages/pkg_resources/init.py", line 3116, in
for dist in working_set
File "/home/andrewcz/tutorial-env2/lib/python3.6/site-packages/pkg_resources/init.py", line 2639, in activate
declare_namespace(pkg)
File "/home/andrewcz/tutorial-env2/lib/python3.6/site-packages/pkg_resources/init.py", line 2176, in declare_namespace
_handle_ns(packageName, path_item)
File "/home/andrewcz/tutorial-env2/lib/python3.6/site-packages/pkg_resources/init.py", line 2096, in _handle_ns
loader = importer.find_module(packageName)
File "", line 426, in _find_module_shim
ImportWarning: Not importing directory /home/andrewcz/tutorial-env2/lib/python3.6/site-packages/mpl_toolkits: missing init
(tutorial-env2) [andrewcz@andrewcz-pc python]$

really cool work though!!
Best,
Andrew

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