- Chris Hoover, cmhoove14, [email protected]
Using optimal control theory to identify cost-optimal interventions for control and elimination of schistosomiasis in different settings. Building on a previous project for ESPM 288 investigating optimal control of a simple infectious disease system, work for which can be found in the Archive folder.
Contains raw data used for this project such as epi data (that's non-sensitive) and large .RData
files that are outputs of more intensive simulations
Contains two .Rmd
s and their outputs. manuscript.Rmd
is text of the manuscruipt that's being generated related to this work. notebook.Rmd
is a daily tracker of my thoughts and actions related to the work I do on this project
Contains scripts that are used in the analysis folder to generate figures, test hypotheses, test functions, generate new questions, etc.
README.md
: This filegitignore
: Files ignored by Git commands
.travis.yml
: Configuration file for automatically running continuous integration checks to verify reproducibility of all.Rmd
notebooks in the repo. If all.Rmd
notebooks can render successfully, the "Build Status" badge above will be green (build success
), otherwise it will be red (build failure
).DESCRIPTION
: Metadata file for the repository, based on the R package standard. Lists any additional R packages/libraries needed for any of the.Rmd
files to run.render_rmds.R
: R script that is run to execute the above described tests, rendering all.Rmd
notebooks.