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mongo-bdb

A MongoDB store of BDB documents

mrs

Maarten's Retrieval Service

na12878-saav-detection

Salz et al (2021). The personalized proteome: a critical examination of bias in protein variant detection methods. Journal of Proteome Research

neural-retina-atlas

optimistic_post-hoc

Post-hoc analyses of the OPTIMISTIC clinical trial: Evaluation of outcome measurement correlations and identification of predictors associated with Cognitive Behavioral Therapy response

pca_intro

Introduction to basic visualizations of multidimensional data sets

pdb-vis

Visualisation of macromolecular properties

proseqjs

A javascript canvas library for visualizing protein sequence and structure properties

reprof-api

RESTful service for running reprof

research-software-directory

The Research Software Directory is a content management system that is tailored to software.

scenes

Create YASARA scenes

seqwise-prediction

a deep learning tool for sequence wise prediction of protein classes

serendip_api

restful service that runs serendip for you

suspect

Variant effect prediction based on custom long-read transcriptomes

synthetic_cells

transmart

i2b2 transmart in docker

transmart-docker

Dockerized TranSMART based on docker-compose

vase

Visualization of Alignments Structures and Entropy

wbcclassification

Internship project investigating the use of synthetically generated images for classification and segmentation of single white blood cell images.

whynot2

wsv_rest

A restful service, used as wrapper around whatif wsv commands

xssp-api

xssp-rest is a REST wrapper around the mkhssp and mkdssp applications.