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cadd-container's Introduction

CADD singularity for execution through Nextflow on Hopper.

Versions

Choose appropriate version (tags).

  • GrCH37
  • GrCH38

Location of annotations for indel calculations:

GrCH37 Lennart, /data/bnf/sw/cadd/1.4/CADD-scripts/data/annotations/GRCh37

GrCH38, Trannel, /trannel/cadd_1.5_hg38/data/annotations/GRCh38_v1.5/

Up-to date scripts (1.5) are located on Lennart, /data/bnf/sw/cadd/1.5/CADD-scripts/

Keep in mind! The resulting container is huge. Keeping copies of the container can cause storage depletion. Copy container to Hopper and delete original on Lennart/Trannel

cadd-container's People

Contributors

viktorhy avatar

Watchers

James Cloos avatar Björn avatar Petter Storm avatar

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