ckolbptb / openheart Goto Github PK
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License: Apache License 2.0
The suggested file structure with
Filename.zip
-- Subject1
-- File1.h5
-- File2.h5
-- Subject2
-- File3.h5
-- File4.h5
does not work because the extraction of the zip file picks up a /
and the XNAT server get's confused with folder structures.
To solve this we can simply replace the /
characters with a hyphen.
The line
Line 2 in d5bc2c3
app.py
.
Traceback (most recent call last):
File "app.py", line 13, in <module>
from user import UserModel, db, login
File "./utils/user.py", line 2, in <module>
from sqlalchemy_mutable.types import MutablePickleType
ModuleNotFoundError: No module named 'sqlalchemy_mutable.types'
Resetting the UID does not work:
This line will throw
OpenHeart/src/openheart/utils/xnat.py
Line 306 in c0b3e58
The content of element 'mrd:mrdScanData' is not complete.
Replacing xnat:mrScanData
with mrd:mrdScanData
does not work.
The error is:
openheart-app-1 | 2023-03-17 13:01:04,914 ERROR openheart Thread-72 [xnat.py:217 - get_container_info_for_scan() ]: raw-in not found in container json
However, the reconstructions are still performed correctly and the snapshots are picked up by the webpage.
The website just crashes if one of the files is not a valid ISMRMRD file with dataset and xml/data sub directories.
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