chavent / clustofvar

Description

This R package is dedicated to the clustering of variables. Variables can be quantitative, qualitative or a mixture of both. It provides hierarchichal and k-means clustering of a set of variables. The center of a cluster of variables is a synthetic variable but is not a ’mean’ as for classical k-means or Ward clustering. This synthetic variable is the first principal component calculated by PCAmix. The homogeneity of a cluster of variables is defined as the sum of the correlation ratio (for qualitative variables) and the squared correlation (for quantitative variables) between the variables and the center of the cluster, which is in all cases a numerical variable. This package deals with datasets of thousands of variables like gene expression data and can also be used for dimension reduction purpose.

Install

To install the current development version from github, use :

devtools::install_github("chavent/ClustOfVar")
# This needs the devtools package to be installed :
# install.packages("devtools")

clustofvar's Issues

Error code 1 from Lapack routine 'dgesdd'

I get error code 1 from Lapack routine 'dgesdd' from time to time.
I don't have a reproducible piece of sample code, but do you possibly know what might be happening behind the scenes?

ClustOfVar_0.8
R version 3.1.3 (2015-03-09)
Platform: x86_64-unknown-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server release 6.7 (Santiago)

---

8-11-2016
Some other thoughts:
http://stackoverflow.com/questions/38820353/r-clustofvar-error-when-there-are-3-identical-columns-in-the-data

Error in svd(Ztilde) : a dimension is zero

Hi,
I get an error as below for my dataset.. any suggestions?

> part1 <- kmeansvar(X.quanti = all_data[,nbrs], init = 20, iter.max = 50, nstart = 50, matsim = T)
Error in svd(Ztilde) : a dimension is zero

Providing the summary of the data fro reference -

summary(all_data[,nbrs])
        v1.V1               v2.V1               v4.V1               v5.V1       
 Min.   :-1.511953   Min.   :-2.523572   Min.   :-3.606847   Min.   :-4.277152  
 1st Qu.:-0.263673   1st Qu.:-0.301819   1st Qu.:-0.063857   1st Qu.:-0.172556  
 Median :-0.152739   Median :-0.151664   Median : 0.053680   Median :-0.039405  
 Mean   :-0.066589   Mean   :-0.066070   Mean   : 0.023385   Mean   :-0.016758  
 3rd Qu.:-0.032870   3rd Qu.: 0.027474   3rd Qu.: 0.170287   3rd Qu.: 0.089806  
 Max.   :17.043547   Max.   : 4.250893   Max.   :13.804157   Max.   : 5.509175  
        v6.V1               v7.V1               v8.V1               v9.V1       
 Min.   :-4.104828   Min.   :-4.201586   Min.   :-0.538529   Min.   :-4.687264  
 1st Qu.:-0.161770   1st Qu.:-0.182115   1st Qu.:-0.444161   1st Qu.:-0.112231  
 Median :-0.041654   Median :-0.053526   Median :-0.400838   Median : 0.017689  
 Mean   :-0.018160   Mean   :-0.023335   Mean   :-0.170447   Mean   : 0.007714  
 3rd Qu.: 0.079510   3rd Qu.: 0.074861   3rd Qu.:-0.340391   3rd Qu.: 0.146469  
 Max.   :29.594568   Max.   :29.640846   Max.   : 6.620801   Max.   : 5.692147  
       v10.V1               v11.V1              v12.V1              v13.V1       
 Min.   :-1.348773   Min.   :-19.603774   Min.   :-7.450233   Min.   :-3.216328  
 1st Qu.:-0.596327   1st Qu.: -0.063804   1st Qu.:-0.604169   1st Qu.:-0.284223  
 Median :-0.408216   Median :  0.058962   Median :-0.290110   Median :-0.175686  
 Mean   :-0.000296   Mean   :  0.025707   Mean   :-0.000216   Mean   :-0.076593  
 3rd Qu.: 0.156118   3rd Qu.:  0.186110   3rd Qu.: 0.145918   3rd Qu.:-0.067200  
 Max.   :12.979032   Max.   :  5.778043   Max.   :14.206054   Max.   :13.693986  
       v14.V1              v15.V1              v16.V1              v17.V1       
 Min.   :-8.381375   Min.   :-2.839780   Min.   :-2.748211   Min.   :-2.001443  
 1st Qu.:-0.582395   1st Qu.:-0.242470   1st Qu.:-0.119240   1st Qu.:-0.233035  
 Median :-0.089202   Median :-0.124409   Median : 0.005355   Median :-0.142857  
 Mean   :-0.000002   Mean   :-0.054241   Mean   : 0.002338   Mean   :-0.062233  
 3rd Qu.: 0.432748   3rd Qu.:-0.009127   3rd Qu.: 0.124878   3rd Qu.:-0.058290  
 Max.   : 5.476068   Max.   :24.435115   Max.   : 8.424915   Max.   : 8.458841  
       v18.V1              v19.V1               v20.V1              v21.V1       
 Min.   :-1.309590   Min.   : -1.36323   Min.   :-15.359351   Min.   :-6.598483  
 1st Qu.:-0.191467   1st Qu.: -0.18395   1st Qu.:  0.112367   1st Qu.:-0.575243  
 Median :-0.103771   Median : -0.14565   Median :  0.228872   Median : 0.013859  
 Mean   :-0.045241   Mean   : -0.06351   Mean   :  0.099791   Mean   : 0.000072  
 3rd Qu.:-0.017170   3rd Qu.: -0.10309   3rd Qu.:  0.331472   3rd Qu.: 0.595327  
 Max.   :29.710657   Max.   :121.15700   Max.   :  1.925132   Max.   :12.162745  
       v23.V1              v25.V1              v26.V1             v27.V1       
 Min.   :-0.273492   Min.   :-0.576161   Min.   :-3.37909   Min.   :-3.298204  
 1st Qu.:-0.273491   1st Qu.:-0.485923   1st Qu.:-0.21842   1st Qu.:-0.210610  
 Median :-0.273491   Median :-0.419800   Median :-0.09152   Median :-0.081770  
 Mean   :-0.121238   Mean   :-0.178510   Mean   :-0.03990   Mean   :-0.035649  
 3rd Qu.:-0.273491   3rd Qu.:-0.335229   3rd Qu.: 0.04081   3rd Qu.: 0.046579  
 Max.   : 4.723786   Max.   : 6.193803   Max.   :32.65255   Max.   :20.767906  
       v28.V1              v29.V1              v32.V1             v33.V1       
 Min.   :-1.896685   Min.   :-6.377215   Min.   :-2.86807   Min.   :-2.192565  
 1st Qu.:-0.132732   1st Qu.:-0.071376   1st Qu.:-0.23625   1st Qu.:-0.335440  
 Median :-0.019800   Median : 0.071444   Median :-0.11837   Median :-0.221287  
 Mean   :-0.008632   Mean   : 0.031147   Mean   :-0.05160   Mean   :-0.096473  
 3rd Qu.: 0.090745   3rd Qu.: 0.212938   3rd Qu.:-0.00312   3rd Qu.:-0.093399  
 Max.   : 5.542459   Max.   : 9.163827   Max.   :32.46618   Max.   :18.072444  
       v34.V1              v35.V1              v36.V1              v37.V1      
 Min.   :-3.159588   Min.   :-6.058612   Min.   :-5.671305   Min.   :-1.38624  
 1st Qu.:-0.664364   1st Qu.:-0.167732   1st Qu.:-0.121427   1st Qu.:-0.28384  
 Median : 0.064486   Median :-0.040449   Median : 0.163966   Median :-0.18534  
 Mean   : 0.000061   Mean   :-0.017634   Mean   : 0.069731   Mean   :-0.08082  
 3rd Qu.: 0.638897   3rd Qu.: 0.092068   3rd Qu.: 0.393766   3rd Qu.:-0.07680  
 Max.   : 6.705548   Max.   : 8.862280   Max.   : 2.814068   Max.   :36.02649  
       v39.V1              v40.V1              v41.V1               v42.V1       
 Min.   :-0.523829   Min.   :-3.299940   Min.   :-7.149755   Min.   :-12.957985  
 1st Qu.:-0.395654   1st Qu.:-0.648246   1st Qu.:-0.110231   1st Qu.: -0.110526  
 Median :-0.364869   Median :-0.041282   Median : 0.021788   Median :  0.008272  
 Mean   :-0.159078   Mean   :-0.000039   Mean   : 0.009499   Mean   :  0.003606  
 3rd Qu.:-0.323819   3rd Qu.: 0.724736   3rd Qu.: 0.158296   3rd Qu.:  0.125601  
 Max.   : 7.888209   Max.   : 3.005682   Max.   :12.755979   Max.   :  7.087955  
       v43.V1              v44.V1              v45.V1              v46.V1       
 Min.   :-3.423586   Min.   :-5.118093   Min.   :-4.431594   Min.   :-0.564745  
 1st Qu.:-0.226440   1st Qu.:-0.116998   1st Qu.:-0.124264   1st Qu.:-0.477801  
 Median :-0.099063   Median :-0.006124   Median : 0.006590   Median :-0.414750  
 Mean   :-0.043190   Mean   :-0.002668   Mean   : 0.002873   Mean   :-0.176362  
 3rd Qu.: 0.033230   3rd Qu.: 0.107195   3rd Qu.: 0.130480   3rd Qu.:-0.333015  
 Max.   :27.482154   Max.   : 4.369029   Max.   : 5.266537   Max.   : 6.343167  
       v48.V1              v49.V1              v50.V1              v51.V1       
 Min.   :-5.718128   Min.   :-8.880035   Min.   :-1.290387   Min.   :-2.864181  
 1st Qu.:-0.176712   1st Qu.:-0.112897   1st Qu.:-0.725943   1st Qu.:-0.142160  
 Median :-0.059996   Median : 0.007975   Median :-0.252012   Median :-0.026100  
 Mean   :-0.026136   Mean   : 0.003477   Mean   :-0.000187   Mean   :-0.011571  
 3rd Qu.: 0.057915   3rd Qu.: 0.130102   3rd Qu.: 0.433113   3rd Qu.: 0.088666  
 Max.   : 3.398514   Max.   :13.269273   Max.   :15.845294   Max.   : 5.092241  
        v53.V1              v54.V1              v55.V1              v57.V1       
 Min.   :-19.681914   Min.   :-0.543261   Min.   :-1.868974   Min.   :-6.024178  
 1st Qu.: -0.054042   1st Qu.:-0.454229   1st Qu.:-0.339490   1st Qu.:-0.149010  
 Median :  0.074524   Median :-0.408630   Median :-0.225902   Median :-0.015568  
 Mean   :  0.032492   Mean   :-0.173760   Mean   :-0.098485   Mean   :-0.006787  
 3rd Qu.:  0.199914   3rd Qu.:-0.329417   3rd Qu.:-0.105332   3rd Qu.: 0.110306  
 Max.   :  5.373779   Max.   : 8.112757   Max.   :22.072925   Max.   :23.522499  
        v58.V1              v59.V1              v60.V1             v61.V1       
 Min.   :-1.1259121   Min.   :-5.105458   Min.   :-3.16459   Min.   :-6.878991  
 1st Qu.:-0.5288513   1st Qu.:-0.182807   1st Qu.:-0.21412   1st Qu.: 0.103347  
 Median :-0.3457933   Median :-0.027628   Median :-0.08844   Median : 0.233291  
 Mean   :-0.1507609   Mean   :-0.012036   Mean   :-0.03855   Mean   : 0.101629  
 3rd Qu.:-0.1334510   3rd Qu.: 0.120690   3rd Qu.: 0.03782   3rd Qu.: 0.345361  
 Max.   : 1.7959869   Max.   : 4.542901   Max.   :33.76189   Max.   : 2.557635  
       v63.V1              v64.V1              v65.V1              v67.V1       
 Min.   :-0.570030   Min.   :-2.510900   Min.   :-8.418151   Min.   :-8.266564  
 1st Qu.:-0.480614   1st Qu.:-0.191222   1st Qu.: 0.098492   1st Qu.:-0.105287  
 Median :-0.415051   Median :-0.088523   Median : 0.221530   Median : 0.023978  
 Mean   :-0.176490   Mean   :-0.038563   Mean   : 0.096590   Mean   : 0.010453  
 3rd Qu.:-0.335391   3rd Qu.: 0.017792   3rd Qu.: 0.333023   3rd Qu.: 0.159749  
 Max.   : 6.171361   Max.   : 5.415634   Max.   : 2.208108   Max.   : 9.532148  
       v68.V1              v69.V1              v70.V1              v73.V1       
 Min.   :-7.607876   Min.   :-4.974090   Min.   :-5.285482   Min.   :-3.047191  
 1st Qu.: 0.224254   1st Qu.:-0.095680   1st Qu.:-0.078122   1st Qu.:-0.251036  
 Median : 0.309466   Median : 0.033945   Median : 0.096752   Median :-0.129481  
 Mean   : 0.134923   Mean   : 0.014818   Mean   : 0.041153   Mean   :-0.056453  
 3rd Qu.: 0.381689   3rd Qu.: 0.147198   3rd Qu.: 0.280338   3rd Qu.: 0.002860  
 Max.   : 1.060095   Max.   : 5.553003   Max.   : 3.329627   Max.   :21.983553  
       v76.V1              v77.V1              v78.V1              v80.V1       
 Min.   :-1.733464   Min.   :-5.802903   Min.   :-7.236186   Min.   :-2.060705  
 1st Qu.:-0.245643   1st Qu.:-0.094438   1st Qu.:-0.100967   1st Qu.:-0.240397  
 Median :-0.166911   Median : 0.052454   Median :-0.003605   Median :-0.110080  
 Mean   :-0.072712   Mean   : 0.022868   Mean   :-0.001574   Mean   :-0.048003  
 3rd Qu.:-0.088278   3rd Qu.: 0.193198   3rd Qu.: 0.122179   3rd Qu.: 0.032648  
 Max.   :12.702650   Max.   :10.078748   Max.   : 3.612686   Max.   :16.597433  
       v81.V1              v82.V1              v83.V1              v84.V1       
 Min.   :-3.264779   Min.   :-1.690036   Min.   :-2.043459   Min.   :-1.712053  
 1st Qu.:-0.036442   1st Qu.:-0.714298   1st Qu.:-0.336794   1st Qu.:-0.308676  
 Median : 0.105926   Median :-0.687076   Median :-0.223542   Median :-0.196883  
 Mean   : 0.045048   Mean   :-0.292195   Mean   :-0.097456   Mean   :-0.085834  
 3rd Qu.: 0.241237   3rd Qu.:-0.482427   3rd Qu.:-0.098597   3rd Qu.:-0.074780  
 Max.   : 5.696609   Max.   : 3.742930   Max.   :16.729858   Max.   :19.572479  
       v85.V1              v86.V1             v87.V1              v88.V1       
 Min.   :-1.987743   Min.   :-2.60300   Min.   :-3.385547   Min.   :-1.837368  
 1st Qu.:-0.270630   1st Qu.:-0.24202   1st Qu.:-0.208003   1st Qu.:-0.285450  
 Median :-0.162771   Median :-0.13630   Median :-0.055687   Median :-0.153554  
 Mean   :-0.072164   Mean   :-0.05942   Mean   :-0.023699   Mean   :-0.066944  
 3rd Qu.:-0.048940   3rd Qu.:-0.02492   3rd Qu.: 0.085914   3rd Qu.:-0.018632  
 Max.   :12.114301   Max.   :40.02802   Max.   : 3.267717   Max.   :17.259335  
       v89.V1              v90.V1             v92.V1             v93.V1              v94.V1       
 Min.   :-0.542682   Min.   :-4.91016   Min.   :-2.20316   Min.   :-3.336550   Min.   :-4.495192  
 1st Qu.:-0.464771   1st Qu.:-0.09152   1st Qu.:-0.24757   1st Qu.:-0.206643   1st Qu.:-0.238321  
 Median :-0.426134   Median : 0.01053   Median :-0.15320   Median :-0.105236   Median :-0.129557  
 Mean   :-0.181203   Mean   : 0.00459   Mean   :-0.06680   Mean   :-0.045879   Mean   :-0.056482  
 3rd Qu.:-0.346785   3rd Qu.: 0.11682   3rd Qu.:-0.05974   3rd Qu.: 0.001651   3rd Qu.:-0.024532  
 Max.   : 6.600183   Max.   :96.66911   Max.   :73.30973   Max.   : 8.861362   Max.   :18.828212  
       v95.V1             v96.V1              v97.V1              v98.V1              v99.V1      
 Min.   :-2.32572   Min.   :-5.758784   Min.   :-3.947626   Min.   :-3.288871   Min.   :-2.71985  
 1st Qu.:-0.25150   1st Qu.:-0.084084   1st Qu.:-0.226556   1st Qu.:-0.161055   1st Qu.:-0.16825  
 Median :-0.16015   Median : 0.051090   Median :-0.093536   Median :-0.010494   Median :-0.03043  
 Mean   :-0.06983   Mean   : 0.022273   Mean   :-0.040786   Mean   :-0.004465   Mean   :-0.01327  
 3rd Qu.:-0.06835   3rd Qu.: 0.193559   3rd Qu.: 0.047833   3rd Qu.: 0.146219   3rd Qu.: 0.11096  
 Max.   :67.40563   Max.   :12.075986   Max.   : 6.408603   Max.   : 5.292285   Max.   :40.82311  
       v100.V1              v101.V1             v102.V1             v103.V1      
 Min.   :-1.7533896   Min.   :-2.920430   Min.   :-1.581933   Min.   :-4.294253  
 1st Qu.: 0.1295845   1st Qu.:-0.223161   1st Qu.:-0.308345   1st Qu.:-0.253785  
 Median : 0.3439524   Median :-0.102485   Median :-0.235150   Median :-0.140531  
 Mean   : 0.1499583   Mean   :-0.044646   Mean   :-0.105567   Mean   :-0.061266  
 3rd Qu.: 0.5204539   3rd Qu.: 0.028234   3rd Qu.:-0.169276   3rd Qu.:-0.027467  
 Max.   : 1.1481662   Max.   : 5.593718   Max.   : 9.354630   Max.   :11.908216  
       v104.V1             v105.V1             v106.V1             v108.V1      
 Min.   :-2.973519   Min.   :-0.482367   Min.   :-3.994356   Min.   :-2.359523  
 1st Qu.:-0.241001   1st Qu.:-0.405639   1st Qu.:-0.026009   1st Qu.:-0.331419  
 Median :-0.150267   Median :-0.374917   Median : 0.102292   Median :-0.187753  
 Mean   :-0.065511   Mean   :-0.159536   Mean   : 0.044561   Mean   :-0.079846  
 3rd Qu.:-0.054164   3rd Qu.:-0.325854   3rd Qu.: 0.224079   3rd Qu.:-0.049955  
 Max.   :19.506476   Max.   : 8.409954   Max.   : 2.786030   Max.   :19.586307  
       v109.V1             v111.V1             v114.V1             v115.V1      
 Min.   :-1.124486   Min.   :-2.260386   Min.   :-5.189671   Min.   :-5.555233  
 1st Qu.:-0.393721   1st Qu.:-0.298149   1st Qu.:-0.603795   1st Qu.:-0.146010  
 Median :-0.296652   Median :-0.175037   Median : 0.176512   Median :-0.035365  
 Mean   :-0.126158   Mean   :-0.076310   Mean   : 0.000042   Mean   :-0.015438  
 3rd Qu.:-0.190233   3rd Qu.:-0.041183   3rd Qu.: 0.688640   3rd Qu.: 0.093299  
 Max.   : 4.258649   Max.   :11.159509   Max.   : 2.456875   Max.   : 4.978516  
       v116.V1             v117.V1             v118.V1             v119.V1      
 Min.   :-3.419508   Min.   :-2.291291   Min.   :-4.164755   Min.   :-0.747687  
 1st Qu.:-0.226890   1st Qu.:-0.196124   1st Qu.:-0.249342   1st Qu.:-0.470812  
 Median :-0.099858   Median :-0.069002   Median :-0.112592   Median :-0.403691  
 Mean   :-0.043537   Mean   :-0.029345   Mean   :-0.049096   Mean   :-0.178969  
 3rd Qu.: 0.027905   3rd Qu.: 0.089027   3rd Qu.: 0.027738   3rd Qu.:-0.320116  
 Max.   :26.438588   Max.   : 3.231447   Max.   : 5.792417   Max.   : 3.966407  
       v120.V1             v121.V1             v122.V1             v123.V1      
 Min.   :-1.751168   Min.   :-2.016507   Min.   :-3.804432   Min.   :-1.364797  
 1st Qu.:-0.322929   1st Qu.:-0.333153   1st Qu.:-0.169077   1st Qu.:-0.379599  
 Median :-0.200108   Median :-0.222617   Median :-0.040170   Median :-0.313197  
 Mean   :-0.087244   Mean   :-0.097064   Mean   :-0.017517   Mean   :-0.138849  
 3rd Qu.:-0.073401   3rd Qu.:-0.094949   3rd Qu.: 0.097208   3rd Qu.:-0.239760  
 Max.   :25.321880   Max.   :12.698124   Max.   : 7.347635   Max.   : 6.316757  
       v124.V1            v126.V1             v127.V1             v128.V1      
 Min.   :-0.438160   Min.   :-3.32278   Min.   :-1.994707   Min.   :-1.892707  
 1st Qu.:-0.398293   1st Qu.:-0.20213   1st Qu.:-0.289055   1st Qu.:-0.328392  
 Median :-0.372218   Median :-0.11602   Median :-0.167561   Median :-0.215476  
 Mean   :-0.158276   Mean   :-0.05058   Mean   :-0.073051   Mean   :-0.091636  
 3rd Qu.:-0.332992   3rd Qu.:-0.02486   3rd Qu.:-0.042447   3rd Qu.:-0.123091  
 Max.   : 8.991278   Max.   :36.40961   Max.   :10.323172   Max.   :16.759406  
       v130.V1             v131.V1         nbrisna.v1      nbrisna.v2      factisna.v3     
 Min.   :-1.521720   Min.   :-1.531054   Min.   :0.000   Min.   :0.0000   Min.   :0.00000  
 1st Qu.:-0.377760   1st Qu.:-0.245243   1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.00000  
 Median :-0.290377   Median :-0.132612   Median :0.000   Median :0.0000   Median :0.00000  
 Mean   :-0.126618   Mean   :-0.057888   Mean   :0.436   Mean   :0.4356   Mean   :0.03038  
 3rd Qu.:-0.190118   3rd Qu.:-0.020735   3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:0.00000  
 Max.   :14.254859   Max.   :16.089310   Max.   :1.000   Max.   :1.0000   Max.   :1.00000  
   nbrisna.v4       nbrisna.v5       nbrisna.v6      nbrisna.v7      nbrisna.v8    
 Min.   :0.0000   Min.   :0.0000   Min.   :0.000   Min.   :0.000   Min.   :0.0000  
 1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.0000  
 Median :0.0000   Median :0.0000   Median :0.000   Median :0.000   Median :0.0000  
 Mean   :0.4356   Mean   :0.4253   Mean   :0.436   Mean   :0.436   Mean   :0.4252  
 3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.0000  
 Max.   :1.0000   Max.   :1.0000   Max.   :1.000   Max.   :1.000   Max.   :1.0000  
   nbrisna.v9      nbrisna.v10         nbrisna.v11     nbrisna.v12         nbrisna.v13   
 Min.   :0.0000   Min.   :0.0000000   Min.   :0.000   Min.   :0.0000000   Min.   :0.000  
 1st Qu.:0.0000   1st Qu.:0.0000000   1st Qu.:0.000   1st Qu.:0.0000000   1st Qu.:0.000  
 Median :0.0000   Median :0.0000000   Median :0.000   Median :0.0000000   Median :0.000  
 Mean   :0.4361   Mean   :0.0007258   Mean   :0.436   Mean   :0.0007433   Mean   :0.436  
 3rd Qu.:1.0000   3rd Qu.:0.0000000   3rd Qu.:1.000   3rd Qu.:0.0000000   3rd Qu.:1.000  
 Max.   :1.0000   Max.   :1.0000000   Max.   :1.000   Max.   :1.0000000   Max.   :1.000  
  nbrisna.v14        nbrisna.v15     nbrisna.v16      nbrisna.v17      nbrisna.v18   
 Min.   :0.00e+00   Min.   :0.000   Min.   :0.0000   Min.   :0.0000   Min.   :0.000  
 1st Qu.:0.00e+00   1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.000  
 Median :0.00e+00   Median :0.000   Median :0.0000   Median :0.0000   Median :0.000  
 Mean   :2.62e-05   Mean   :0.436   Mean   :0.4365   Mean   :0.4356   Mean   :0.436  
 3rd Qu.:0.00e+00   3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:1.000  
 Max.   :1.00e+00   Max.   :1.000   Max.   :1.0000   Max.   :1.0000   Max.   :1.000  
  nbrisna.v19     nbrisna.v20     nbrisna.v21        factisna.v22       nbrisna.v23    
 Min.   :0.000   Min.   :0.000   Min.   :0.000000   Min.   :0.000000   Min.   :0.0000  
 1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.000000   1st Qu.:0.000000   1st Qu.:0.0000  
 Median :0.000   Median :0.000   Median :0.000000   Median :0.000000   Median :0.0000  
 Mean   :0.436   Mean   :0.436   Mean   :0.005177   Mean   :0.004272   Mean   :0.4433  
 3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:0.000000   3rd Qu.:0.000000   3rd Qu.:1.0000  
 Max.   :1.000   Max.   :1.000   Max.   :1.000000   Max.   :1.000000   Max.   :1.0000  
  nbrisna.v25      nbrisna.v26     nbrisna.v27     nbrisna.v28     nbrisna.v29     factisna.v30   
 Min.   :0.0000   Min.   :0.000   Min.   :0.000   Min.   :0.000   Min.   :0.000   Min.   :0.0000  
 1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.0000  
 Median :0.0000   Median :0.000   Median :0.000   Median :0.000   Median :0.000   Median :1.0000  
 Mean   :0.4252   Mean   :0.436   Mean   :0.436   Mean   :0.436   Mean   :0.436   Mean   :0.5266  
 3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.0000  
 Max.   :1.0000   Max.   :1.000   Max.   :1.000   Max.   :1.000   Max.   :1.000   Max.   :1.0000  
  factisna.v31      nbrisna.v32     nbrisna.v33     nbrisna.v34       nbrisna.v35   
 Min.   :0.00000   Min.   :0.000   Min.   :0.000   Min.   :0.00000   Min.   :0.000  
 1st Qu.:0.00000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.00000   1st Qu.:0.000  
 Median :0.00000   Median :0.000   Median :0.000   Median :0.00000   Median :0.000  
 Mean   :0.03038   Mean   :0.436   Mean   :0.436   Mean   :0.00094   Mean   :0.436  
 3rd Qu.:0.00000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:0.00000   3rd Qu.:1.000  
 Max.   :1.00000   Max.   :1.000   Max.   :1.000   Max.   :1.00000   Max.   :1.000  
  nbrisna.v36      nbrisna.v37     nbrisna.v39     nbrisna.v40       nbrisna.v41   
 Min.   :0.0000   Min.   :0.000   Min.   :0.000   Min.   :0.00000   Min.   :0.000  
 1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.00000   1st Qu.:0.000  
 Median :0.0000   Median :0.000   Median :0.000   Median :0.00000   Median :0.000  
 Mean   :0.4253   Mean   :0.436   Mean   :0.436   Mean   :0.00094   Mean   :0.436  
 3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:0.00000   3rd Qu.:1.000  
 Max.   :1.0000   Max.   :1.000   Max.   :1.000   Max.   :1.00000   Max.   :1.000  
  nbrisna.v42     nbrisna.v43     nbrisna.v44      nbrisna.v45     nbrisna.v46    
 Min.   :0.000   Min.   :0.000   Min.   :0.0000   Min.   :0.000   Min.   :0.0000  
 1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.0000  
 Median :0.000   Median :0.000   Median :0.0000   Median :0.000   Median :0.0000  
 Mean   :0.436   Mean   :0.436   Mean   :0.4356   Mean   :0.436   Mean   :0.4252  
 3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.0000  
 Max.   :1.000   Max.   :1.000   Max.   :1.0000   Max.   :1.000   Max.   :1.0000  
  nbrisna.v48      nbrisna.v49     nbrisna.v50         nbrisna.v51      factisna.v52     
 Min.   :0.0000   Min.   :0.000   Min.   :0.0000000   Min.   :0.0000   Min.   :0.00e+00  
 1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.0000000   1st Qu.:0.0000   1st Qu.:0.00e+00  
 Median :0.0000   Median :0.000   Median :0.0000000   Median :0.0000   Median :0.00e+00  
 Mean   :0.4356   Mean   :0.436   Mean   :0.0007433   Mean   :0.4433   Mean   :2.19e-05  
 3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:0.0000000   3rd Qu.:1.0000   3rd Qu.:0.00e+00  
 Max.   :1.0000   Max.   :1.000   Max.   :1.0000000   Max.   :1.0000   Max.   :1.00e+00  
  nbrisna.v53     nbrisna.v54      nbrisna.v55     factisna.v56      nbrisna.v57   
 Min.   :0.000   Min.   :0.0000   Min.   :0.000   Min.   :0.00000   Min.   :0.000  
 1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.00000   1st Qu.:0.000  
 Median :0.000   Median :0.0000   Median :0.000   Median :0.00000   Median :0.000  
 Mean   :0.436   Mean   :0.4252   Mean   :0.436   Mean   :0.06034   Mean   :0.436  
 3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:0.00000   3rd Qu.:1.000  
 Max.   :1.000   Max.   :1.0000   Max.   :1.000   Max.   :1.00000   Max.   :1.000  
  nbrisna.v58     nbrisna.v59      nbrisna.v60     nbrisna.v61      nbrisna.v63    
 Min.   :0.000   Min.   :0.0000   Min.   :0.000   Min.   :0.0000   Min.   :0.0000  
 1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.0000  
 Median :0.000   Median :0.0000   Median :0.000   Median :0.0000   Median :0.0000  
 Mean   :0.436   Mean   :0.4356   Mean   :0.436   Mean   :0.4356   Mean   :0.4252  
 3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.0000  
 Max.   :1.000   Max.   :1.0000   Max.   :1.000   Max.   :1.0000   Max.   :1.0000  
  nbrisna.v64      nbrisna.v65     nbrisna.v67     nbrisna.v68     nbrisna.v69    
 Min.   :0.0000   Min.   :0.000   Min.   :0.000   Min.   :0.000   Min.   :0.0000  
 1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.0000  
 Median :0.0000   Median :0.000   Median :0.000   Median :0.000   Median :0.0000  
 Mean   :0.4356   Mean   :0.436   Mean   :0.436   Mean   :0.436   Mean   :0.4365  
 3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.0000  
 Max.   :1.0000   Max.   :1.000   Max.   :1.000   Max.   :1.000   Max.   :1.0000  
  nbrisna.v70      nbrisna.v73     nbrisna.v76      nbrisna.v77     nbrisna.v78    
 Min.   :0.0000   Min.   :0.000   Min.   :0.0000   Min.   :0.000   Min.   :0.0000  
 1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.0000  
 Median :0.0000   Median :0.000   Median :0.0000   Median :0.000   Median :0.0000  
 Mean   :0.4253   Mean   :0.436   Mean   :0.4356   Mean   :0.436   Mean   :0.4365  
 3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.0000  
 Max.   :1.0000   Max.   :1.000   Max.   :1.0000   Max.   :1.000   Max.   :1.0000  
  nbrisna.v80      nbrisna.v81      nbrisna.v82      nbrisna.v83     nbrisna.v84   
 Min.   :0.0000   Min.   :0.0000   Min.   :0.0000   Min.   :0.000   Min.   :0.000  
 1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.000  
 Median :0.0000   Median :0.0000   Median :0.0000   Median :0.000   Median :0.000  
 Mean   :0.4361   Mean   :0.4253   Mean   :0.4253   Mean   :0.436   Mean   :0.436  
 3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.000  
 Max.   :1.0000   Max.   :1.0000   Max.   :1.0000   Max.   :1.000   Max.   :1.000  
  nbrisna.v85      nbrisna.v86     nbrisna.v87      nbrisna.v88     nbrisna.v89    
 Min.   :0.0000   Min.   :0.000   Min.   :0.0000   Min.   :0.000   Min.   :0.0000  
 1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.0000  
 Median :0.0000   Median :0.000   Median :0.0000   Median :0.000   Median :0.0000  
 Mean   :0.4433   Mean   :0.436   Mean   :0.4256   Mean   :0.436   Mean   :0.4252  
 3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.0000  
 Max.   :1.0000   Max.   :1.000   Max.   :1.0000   Max.   :1.000   Max.   :1.0000  
  nbrisna.v90     factisna.v91       nbrisna.v92     nbrisna.v93     nbrisna.v94   
 Min.   :0.000   Min.   :0.00e+00   Min.   :0.000   Min.   :0.000   Min.   :0.000  
 1st Qu.:0.000   1st Qu.:0.00e+00   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.000  
 Median :0.000   Median :0.00e+00   Median :0.000   Median :0.000   Median :0.000  
 Mean   :0.436   Mean   :2.19e-05   Mean   :0.436   Mean   :0.436   Mean   :0.436  
 3rd Qu.:1.000   3rd Qu.:0.00e+00   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.000  
 Max.   :1.000   Max.   :1.00e+00   Max.   :1.000   Max.   :1.000   Max.   :1.000  
  nbrisna.v95     nbrisna.v96     nbrisna.v97     nbrisna.v98      nbrisna.v99     nbrisna.v100  
 Min.   :0.000   Min.   :0.000   Min.   :0.000   Min.   :0.0000   Min.   :0.000   Min.   :0.000  
 1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.000  
 Median :0.000   Median :0.000   Median :0.000   Median :0.0000   Median :0.000   Median :0.000  
 Mean   :0.436   Mean   :0.436   Mean   :0.436   Mean   :0.4255   Mean   :0.436   Mean   :0.436  
 3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.000  
 Max.   :1.000   Max.   :1.000   Max.   :1.000   Max.   :1.0000   Max.   :1.000   Max.   :1.000  
  nbrisna.v101     nbrisna.v102     nbrisna.v103    nbrisna.v104    nbrisna.v105   
 Min.   :0.0000   Min.   :0.0000   Min.   :0.000   Min.   :0.000   Min.   :0.0000  
 1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.000   1st Qu.:0.0000  
 Median :0.0000   Median :0.0000   Median :0.000   Median :0.000   Median :0.0000  
 Mean   :0.4356   Mean   :0.4489   Mean   :0.436   Mean   :0.436   Mean   :0.4255  
 3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.000   3rd Qu.:1.0000  
 Max.   :1.0000   Max.   :1.0000   Max.   :1.000   Max.   :1.000   Max.   :1.0000  
  nbrisna.v106    factisna.v107       nbrisna.v108     nbrisna.v109     nbrisna.v111  
 Min.   :0.0000   Min.   :0.00e+00   Min.   :0.0000   Min.   :0.0000   Min.   :0.000  
 1st Qu.:0.0000   1st Qu.:0.00e+00   1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.000  
 Median :0.0000   Median :0.00e+00   Median :0.0000   Median :0.0000   Median :0.000  
 Mean   :0.4356   Mean   :2.19e-05   Mean   :0.4253   Mean   :0.4253   Mean   :0.436  
 3rd Qu.:1.0000   3rd Qu.:0.00e+00   3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:1.000  
 Max.   :1.0000   Max.   :1.00e+00   Max.   :1.0000   Max.   :1.0000   Max.   :1.000  
 factisna.v112      factisna.v113     nbrisna.v114        nbrisna.v115     nbrisna.v116  
 Min.   :0.000000   Min.   :0.0000   Min.   :0.0000000   Min.   :0.0000   Min.   :0.000  
 1st Qu.:0.000000   1st Qu.:0.0000   1st Qu.:0.0000000   1st Qu.:0.0000   1st Qu.:0.000  
 Median :0.000000   Median :0.0000   Median :0.0000000   Median :0.0000   Median :0.000  
 Mean   :0.003476   Mean   :0.4838   Mean   :0.0002361   Mean   :0.4365   Mean   :0.436  
 3rd Qu.:0.000000   3rd Qu.:1.0000   3rd Qu.:0.0000000   3rd Qu.:1.0000   3rd Qu.:1.000  
 Max.   :1.000000   Max.   :1.0000   Max.   :1.0000000   Max.   :1.0000   Max.   :1.000  
  nbrisna.v117     nbrisna.v118    nbrisna.v119     nbrisna.v120    nbrisna.v121  
 Min.   :0.0000   Min.   :0.000   Min.   :0.0000   Min.   :0.000   Min.   :0.000  
 1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.000  
 Median :0.0000   Median :0.000   Median :0.0000   Median :0.000   Median :0.000  
 Mean   :0.4253   Mean   :0.436   Mean   :0.4433   Mean   :0.436   Mean   :0.436  
 3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.000  
 Max.   :1.0000   Max.   :1.000   Max.   :1.0000   Max.   :1.000   Max.   :1.000  
  nbrisna.v122     nbrisna.v123     nbrisna.v124    factisna.v125        nbrisna.v126  
 Min.   :0.0000   Min.   :0.0000   Min.   :0.0000   Min.   :0.0000000   Min.   :0.000  
 1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.0000   1st Qu.:0.0000000   1st Qu.:0.000  
 Median :0.0000   Median :0.0000   Median :0.0000   Median :0.0000000   Median :0.000  
 Mean   :0.4361   Mean   :0.4433   Mean   :0.4252   Mean   :0.0007039   Mean   :0.436  
 3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:1.0000   3rd Qu.:0.0000000   3rd Qu.:1.000  
 Max.   :1.0000   Max.   :1.0000   Max.   :1.0000   Max.   :1.0000000   Max.   :1.000  
  nbrisna.v127    nbrisna.v128     nbrisna.v130    nbrisna.v131       nbrnacounts.V1   
 Min.   :0.000   Min.   :0.0000   Min.   :0.000   Min.   :0.0000   Min.   :-0.8844937  
 1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:0.000   1st Qu.:0.0000   1st Qu.:-0.8844937  
 Median :0.000   Median :0.0000   Median :0.000   Median :0.0000   Median :-0.8844937  
 Mean   :0.436   Mean   :0.4253   Mean   :0.436   Mean   :0.4365   Mean   : 0.0000000  
 3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.:1.000   3rd Qu.:1.0000   3rd Qu.: 1.1509953  
 Max.   :1.000   Max.   :1.0000   Max.   :1.000   Max.   :1.0000   Max.   : 1.3138344  
   factnacounts.V1  
 Min.   :-1.402290  
 1st Qu.:-0.172334  
 Median :-0.172334  
 Mean   : 0.000000  
 3rd Qu.: 1.057623  
 Max.   :10.897275  

Thanks,
Manish

Function `hclustvar` is Not compatible with tibble

The function hclustvar will inspect its argument "X.quanti" and "X.quali" whether their type is the same as you indicated.
However, the part of code related to type inspection is:

for (v in 1:ncol(X.quanti)) {
      if (!is.numeric(X.quanti[, v])) 
        stop("All variables in X.quanti must be numeric", 
          call. = FALSE)

if X.quanti is of type "tibble", X.quanti[,v] will be of type "tbl_df" "tbl" "data.frame", instead of the type of the column.

Actually I think hclustvar should seperate the dataframe by column type automatically.