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Matt Chambers's Projects

adv-r icon adv-r

Advanced R programming: a book

ahocorasicktrie icon ahocorasicktrie

An R package that implements fast searching for multiple keywords in multiple texts.

ansible-galaxy-extras icon ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

cfncluster icon cfncluster

CfnCluster is a framework that deploys and maintains HPC clusters on AWS.

cfncluster-node icon cfncluster-node

cfncluster-node is the python package installed on the Amazon EC2 instances launched as part of CfnCluster

customprodb icon customprodb

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/customProDB.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=customProDB.

devtools icon devtools

Tools to make an R developer's life easier

galaxy icon galaxy

Data intensive biology for everyone.

galaxy_tools icon galaxy_tools

Tool Shed repositories maintained and developed by the EnginesOn organization

msgfplus icon msgfplus

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

omicron-galaxy icon omicron-galaxy

A docker container for the Zhang Lab's proteogenomics-oriented Galaxy instance.

planemo icon planemo

Command-line utilities to assist in developing tools for the Galaxy project.

probamr icon probamr

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/proBAMr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=proBAMr.

pwiz icon pwiz

The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

starforge icon starforge

Build Galaxy dependencies, wheels, and other things, in Docker (and other things)

tools-galaxyp icon tools-galaxyp

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community

tools-iuc icon tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

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