celsiustx Goto Github PK

anndata

bbknn

Batch balanced KNN

black-check

github action to run black

cellxgene-gateway-old

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

checkout

Action for checking out a repo

dask

Parallel computing with task scheduling

diem

Clean up single-cell data

metaflow

Build and manage real-life data science projects with ease.

metaflow-service

:rocket: Metadata tracking and UI service for Metaflow!

numpy

The fundamental package for scientific computing with Python.

parametric_tsne

Python / Tensorflow / Keras implementation of Parametric tSNE algorithm

phenograph

Subpopulation detection in high-dimensional single-cell data

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

sci-rna-seq3_pipeline

Fork of pipeline scripts for sci-RNA-seq3 (bash, R, python)

scipy

Scipy library main repository

scrublet

Detect doublets in single-cell RNA-seq data

setup-python

Set up your GitHub Actions workflow with a specific version of Python

solo

software to detect doublets

ssh-key-action

GitHub Action that installs SSH key to .ssh

vireo

Demultiplexing pooled scRNA-seq data with or without genotype reference