cbh2021 / challenge-template

Example Challenge

This repository is a template for creating challenges. You can change this README to describe your challenge in detail.

The participants will fork your challenge repository at the beginning of the hackathon.

Challenge Aim

The aim of this challenge is to predict adenine amino acid count. You are given a FASTA file using the --infile argument. For each protein, output your prediction for the number adenine amino acids in that protein.

Example Output

You code should output a file called predictions.csv in the following format:

name,prediction
prot1,2
prot2,6

Benchmarking System

The continuous integration script in .github/workflows/ci.yml will automatically build the Dockerfile on every commit to the main branch. This docker image will be published as your hackathon submission to https://biolib.com/<YourTeam>/<TeamName>. For this to work, make sure you set the BIOLIB_TOKEN and BIOLIB_PROJECT_URI accordingly as repository secrets.

To read more about the benchmarking system click here.