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1.0 1.0 2.0 4.93 MB

Tool for analysing BLAST output for ncRNA sequences

License: GNU General Public License v2.0

Python 96.06% HTML 1.92% CSS 0.90% JavaScript 1.13%
blast blast-search rna rna-structure-prediction

rboanalyzer's People

Contributors

martinmodrak avatar schwarzmarek avatar

Stargazers

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Watchers

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Forkers

elixir-cz pythseq

rboanalyzer's Issues

Execution error (python ValueError)

Executing the conda install command results in nothing, perhaps the the conda channel is not available?

# The command
conda install -c conda-forge -c bioconda -c schwarz.marek rboanalyzer

# Gives
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - rboanalyzer

Current channels:

  - https://conda.anaconda.org/conda-forge/osx-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://conda.anaconda.org/bioconda/osx-64
  - https://conda.anaconda.org/bioconda/noarch
  - https://conda.anaconda.org/schwarz.marek/osx-64
  - https://conda.anaconda.org/schwarz.marek/noarch
  - https://conda.anaconda.org/pytorch/osx-64
  - https://conda.anaconda.org/pytorch/noarch
  - https://conda.anaconda.org/au-eoed/osx-64
  - https://conda.anaconda.org/au-eoed/noarch
  - https://repo.anaconda.com/pkgs/main/osx-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/osx-64
  - https://repo.anaconda.com/pkgs/r/noarch
  - https://conda.anaconda.org/r/osx-64
  - https://conda.anaconda.org/r/noarch
  - https://conda.anaconda.org/anaconda/osx-64
  - https://conda.anaconda.org/anaconda/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

Additionally, is it possible to run the program with more than one query miRNA sequence? Using perhaps, 20 target miRNAs in a multifasta?

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