Scripts for the article "Holocentric repeat landscapes: from microevolutionary patterns to macroevolutionary associations with karyotype evolution"
Cornet, C., Mora, P., Augustijnen, H., Nguyen, P., Escudero, M., & Lucek, K. (2023). Holocentric repeat landscapes: From micro-evolutionary patterns to macro-evolutionary associations with karyotype evolution. Molecular Ecology, 00, 1โ19.ย https://doi.org/10.1111/mec.17100
The bash scripts (A1 to A5) are given for the interspecific analyses of the repeat landscape in 14 Carex species. The same scripts were used for the analyses on Erebia butterflies.