Comments (3)
Eventually, the tabular output should also contain individual assignments and a warning, if the maximal RTL path violates one (or more) individual assignments.
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Additionally, we could state the lowest assignment not violating any taxon label (i.e. not the LCA, but the lowest assignment without an explicit conflict at higher levels).
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Minimal working version implemented in f30f2f5
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Related Issues (20)
- Assembly statistics
- Best ANI hit
- Incorrect RTLpath HOT 1
- Fix ownership of files in work HOT 2
- Review final taxID assignments HOT 1
- State if 16S was found
- Confidence values HOT 3
- Scientific name HOT 1
- warning process name deprecated HOT 7
- Check for Nextflow version HOT 1
- Update CAMITAX db HOT 3
- Installation and running HOT 8
- start with conda HOT 2
- error running camitax HOT 4
- Using CAMITAX without an internet connection HOT 3
- Fails to download chekm databases HOT 1
- Suggestion : Run checkm on more than 1 MAG at a time HOT 1
- Issues installing docker HOT 1
- checkM fails when using Singularity
- not working with singularity HOT 1
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