cambiotraining / hpc-intro-sanger Goto Github PK

• Copy newer version of https://github.com/cambiotraining/hpc-intro/blob/main/images/tool_overview.svg
• Update course data and generate link from Dropbox
• Check if steps requesting memory in LSF section need to be removed (including exercise 1 and 2)
• module load bowtie2 - need to check with guest account!
  • Plan A - we hope it works
  • Plan B - we create script that exports $MODULEPATH varibale with CASM path (same as Chloe) to .bashrc
  • Plan C - compile bowtie2 and add it to the PATH
• Need to install argparse interactively with them.
• Need to use R CMD BATCH instead of RScript

Memory issue on gen3:

• cannot be specified with -m and -r
• at the moment we don't know how much memory is being requested

There's a bswitch command, where you can switch the partition where the job was running, even while the job is running.