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CABSEL's Projects

calista icon calista

CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis

crosstx icon crosstx

CrossTx: Cross-cell line Transcriptomic Signature Predictions

deltafba icon deltafba

DeltaFBA is a set of MATLAB functions that employs constraint-based modeling, in combination with differential gene expression data, to evaluate changes in the intracellular flux distribution between two conditions.

deltanet icon deltanet

DeltaNet is a network analysis tool for predicting genetic perturbations from gene expression data.

gfa icon gfa

Glycosylation Flux Analysis

redemption icon redemption

Reduced Dimension Ensemble Modeling and Parameter Estimation

reduce icon reduce

REDUCE is an algorithm for optimal design of gene knock-out (KO) for the purpose of gene regulatory network (GRN) inference.

sincerities icon sincerities

SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.

trace icon trace

Transitive Reduction and Closure Ensemble

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