module 'tangram' has no attribute 'pp_adatas' about tangram

[lewlin]

@ziqlu0722 could you please look into this?

[ziqlu0722]

Hi @NingWang1729! Could I know how did you install tangram and what version do you use?

[NingWang1729]

Hi @ziqlu0722!

I used !pip install tangram-sc on the collab tutorial, and pip install tangram-sc on a linux machine.
The tangram version on the linux environment is version 1.0.2

[ziqlu0722]

Hi @NingWang1729, I cannot explain how I missed your reply! Actually it doesn't complain about missing pp_adatas function when I try it on google colab or on my linux machine. I close this for now but feel free to reopen it if you still have issue. Thank you!

[gebdu]

tg.pp_adatas(adata_sc, adata_st, genes=markers)
Traceback (most recent call last):
File "", line 1, in
AttributeError: module 'tangram' has no attribute 'pp_adatas'

tangram version 1.04; installed: pip install tangram-sc

[Dondonn]

Did you maybe also pip installed tangram (and tangram-sc)?
If this is the case you can try: pip uninstall tangram.

[ParitoshP702]

Even I am facing the same issue, tangram does not seem to have 'pp_adatas' function .

Is there any way to correct the issue?

[NingWang1729]

The original issue I encountered was due to a file named tangram.py being present and imported rather than the tangram library. Hope this helps.

[ParitoshP702]

In my case there is no file named 'tangram.py' still I am facing the issue