This is the repository containing the supplementary code for the paper Variant interpretation using the world’s largest population database: gnomAD.
Description of files:
get_data_for_figures.py
Script containing all the code needed to generate a random subset of samples and filter gnomAD v.2.1.1 exomes to rare variants of interest for those samples.
- Python 3.8.8
- Hail version 0.2.65-367cf1874d85
- gnomad -
get_data_for_figures.py
uses additional code currently not found in a release version of gnomad. You will need to add the gnomad repo to your python path. The latest commit as of June 21, 2021 is here. - gnomad_qc
Run the code yourself:
python3 get_data_for_figures.py
#Get help descriptions on the optional arguments:
python3 get_data_for_figures.py -h