brewsci / homebrew-num Goto Github PK

Subscribe to this issue to receive updates about Brewsci/num.

@dpo: I was discussing adding a toolchain for MPI libraries that is based on MPICH rather than OpenMPI with @sjackman.

I wanted to check with you first as to whether or not it would be acceptable to you to add them as part of brewsci/homebrew-num. The formula would need an additional level of namespacing.

I'm also interested in swapping clang for gcc/g++ but that's not quite as large of a concern at the moment. In theory, at least the C ABI should be static & standardized, allowing code built with one C compiler to be linked against when using a different one. However, build system introspection can cause differences in the way the code ends up getting built and what features are supported. This is probably more true for C++ than C. Also, in the past I've run into issues where MPI will stubbornly wrap the compiler it was built with, or, when it wraps a different compiler, builds end up failing or runtime bugs are encountered.

If you give it the go-ahead, then I'll add packages switching OpenMPI for MPICH (and add a -mpich suffix to the file/formula name)

I found this issue when trying to access MUMPS in Julia, filing this issue.

@dpo was helpful and pointed me to a likely issue with need to rebuild dependencies of brewsci-mumps.

I'm just filing this here for completeness.

I am trying to install MUMPS on Mac OS through homeberw.
$ brew tap brewsci/num
$ brew install brewsci-mumps

However, I got the error message. The error message I got is
==> Downloading https://homebrew.bintray.com/bottles-num/brewsci-mumps-5.2.1.sie #=#=#
curl: (22) The requested URL returned error: 404 Not Found
Error: Failed to download resource "brewsci-mumps"
Download failed: https://homebrew.bintray.com/bottles-num/brewsci-mumps-5.2.1.sierra.bottle.tar.gz

I am not sure how to solve this error. My guess is that the issue comes from the latest version of mumps is 5.3.1 instead of 5.2.1. Any idea? Thank you in advance.

So I get a timeout when installing brewsci/brewsci-mumps and it tries to connect to http://mumps.enseeiht.fr. I am not sure what is causing this, but maybe the source server for MUMPS is down, and needs to be fixed.

OS: MacOS Ventura 13.0.1
Brew version:

Homebrew 3.6.12
Homebrew/homebrew-core (git revision 96fc626da1d; last commit 2022-11-24)
Homebrew/homebrew-cask (git revision c3bc349f40; last commit 2022-11-24)

Complete log of brew install brewsci-mumps:

==> Auto-updated Homebrew!
Updated 1 tap (homebrew/core).

==> Downloading https://ghcr.io/v2/homebrew/core/openblas/manifests/0.3.21
Already downloaded: /Users/s.anupam/Library/Caches/Homebrew/downloads/074ec37db71eabcbf72850c1ab87a877c4d7d7c94bcd9b1fc6d8b3df1c3d79f1--openblas-0.3.21.bottle_manifest.json
==> Downloading https://ghcr.io/v2/homebrew/core/openblas/blobs/sha256:5f2cdcefe
Already downloaded: /Users/s.anupam/Library/Caches/Homebrew/downloads/e29923fe52f3f0806dd2811948a6b6571a15d6763d0ba6a980431f1d6552e477--openblas--0.3.21.arm64_ventura.bottle.tar.gz
==> Downloading https://ghcr.io/v2/homebrew/core/scalapack/manifests/2.2.0_1
Already downloaded: /Users/s.anupam/Library/Caches/Homebrew/downloads/3b332c56e2e000693a71c46ea1c9d211b48675f5a77752905cf616bce2a6e0a6--scalapack-2.2.0_1.bottle_manifest.json
==> Downloading https://ghcr.io/v2/homebrew/core/scalapack/blobs/sha256:29ba1d09
Already downloaded: /Users/s.anupam/Library/Caches/Homebrew/downloads/b5095417f68df1192df7a154d83f2f23cb74ed15734624e9ed7af7dcfce55a28--scalapack--2.2.0_1.arm64_ventura.bottle.tar.gz
==> Downloading https://ghcr.io/v2/homebrew/core/cmake/manifests/3.25.0
Already downloaded: /Users/s.anupam/Library/Caches/Homebrew/downloads/c1142e949b1976641f41a167776fba34b8abc2930766f710c2954c586b6110b7--cmake-3.25.0.bottle_manifest.json
==> Downloading https://ghcr.io/v2/homebrew/core/cmake/blobs/sha256:80c206a6884a
Already downloaded: /Users/s.anupam/Library/Caches/Homebrew/downloads/2d46ada9690dfe69098f3cb246ef639b5711992300a829b47a180d0c865bd172--cmake--3.25.0.arm64_ventura.bottle.tar.gz
==> Downloading http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.
######################################################################## 100.0%
==> Downloading https://raw.githubusercontent.com/Homebrew/patches/f104fbb1e0940
Already downloaded: /Users/s.anupam/Library/Caches/Homebrew/downloads/24086a68bb86c555404a59cab7be7e929db08f7493333ba0e4d3df4b168ec1dc--commit-82409d68.patch
==> Downloading https://raw.githubusercontent.com/Homebrew/patches/f104fbb1e0940
Already downloaded: /Users/s.anupam/Library/Caches/Homebrew/downloads/d2969f0c126bb5814a3918d872d4cce28849a3bdf823a7bac226bb087f4188c8--commit-1c1a9fd0.patch
==> Downloading http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.
######################################################################## 100.0%
==> Downloading https://github.com/dpo/mumps_simple/archive/v0.4.tar.gz
Already downloaded: /Users/s.anupam/Library/Caches/Homebrew/downloads/664ab125362a75b100bebd464dcebbf3e55f344bf9fd9876f506e42d1c3b3074--mumps_simple-0.4.tar.gz
==> Downloading http://mumps.enseeiht.fr/MUMPS_5.3.5.tar.gz
curl: (28) Failed to connect to mumps.enseeiht.fr port 80 after 75013 ms: Operation timed out
Warning: Problem : timeout. Will retry in 1 seconds. 3 retries left.
curl: (28) Failed to connect to mumps.enseeiht.fr port 80 after 75004 ms: Operation timed out
Warning: Problem : timeout. Will retry in 2 seconds. 2 retries left.
curl: (28) Failed to connect to mumps.enseeiht.fr port 80 after 75007 ms: Operation timed out
Warning: Problem : timeout. Will retry in 4 seconds. 1 retries left.
curl: (28) Failed to connect to mumps.enseeiht.fr port 80 after 75010 ms: Operation timed out

Wget results:

--2022-11-24 14:09:47--  (try: 8)  http://mumps.enseeiht.fr/MUMPS_5.3.5.tar.gz
Connecting to mumps.enseeiht.fr (mumps.enseeiht.fr)|147.127.176.144|:80...

When I try to install brewsci-mumps (mumps-5.2.1), I obtain the following error:

make alllib RANLIB=echo OPTF=-O CDEFS=-DAdd_ LMETISDIR=/usr/local/opt/brewsci-parmetis/lib IMETIS=/usr/local/opt/brewsci-parmetis/include LMETIS=-L/usr/local
Last 15 lines from /Users/serge/Library/Logs/Homebrew/brewsci-mumps/01.make:
815 | CALL MUMPS_ICOPY_64TO32(XADJ8, NVTX, PARENT)
| 2
Error: Element of assumed-shape or pointer array as actual argument at (1) cannot correspond to actual argument at (2)
ana_orderings_wrappers_m.F:114:31:

114 | CALL METIS_NODEND( NCMP, IPE, IW, FRERE(1),
| 1
......
284 | CALL METIS_NODEND( NCMP, IPE8, IW, FRERE(1),
| 2
Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/INTEGER(8)).
make[3]: *** [ana_orderings_wrappers_m.o] Error 1
make[2]: *** [c] Error 2
make[1]: *** [mumps_lib] Error 2
make: *** [c] Error 2

Thanks in advance for your response.

The following is an import error with brewsci-superlu-dist:

ImportError: dlopen(/Users/BridgeRain/opt/anaconda3/lib/python3.8/site-packages/openseespy/opensees/mac/opensees.so, 2): Library not loaded: /usr/local/opt/openblas/lib/libopenblasp-r0.3.5.dylib
  
Referenced from: /usr/local/opt/brewsci-superlu-dist/lib/libsuperlu_dist.5.dylib
  
Reason: image not found

The latest version of formula "openblas" is 0.3.12 and the corresponding library file is "libopenblasp-r0.3.12.dylib" instead of "libopenblasp-r0.3.5.dylib". This may be the reason of the import error.

How to solve it? I think it is related to "libsuperlu_dist.5.dylib".

Thanks in advance for your response.