Comments (2)
This isn't an option until pyreadr is able to read matrices correctly. I'll leave this open as a reminder to check again in a few months.
from focus.
Seems that the issue with matrices was eventually fixed, see here: ofajardo/pyreadr#5 (comment). We should look into this at some point. Seems like a much lighter approach to dealing with RData than the entire r2py ecosystem.
from focus.
Related Issues (20)
- [ERROR] Import submodule requires mygene and rpy2 to be installed
- [ERROR] ufunc 'isfinite' not supported for the input types HOT 2
- Please specify independent regions location or default regions with '37:EUR', etc HOT 2
- Integer column has NA values in column 3 HOT 4
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- Focus import error - "500 Server Error: Internal Server Error for url: http://mygene.info/v3/query/" HOT 2
- ERROR] MetaData.__init__() got multiple values for argument 'schema' HOT 1
- error in creating the weight database HOT 3
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- name 'zscores' is not defined errror with when running finemap with --intercept HOT 2
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- Modifying the focus.db
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from focus.