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bogdanlab's Projects
admixed_genotype_simulation
A Snakemake pipeline for simulating genotypes for admixed population
basic_genoeypte_qc_pipeline
Version of basic genotype QC pipeline from ATLAS, but modified for Hoffman
beavr
big_summer_2017
a repository for storing scripts for the big summer
fizi
Leveraging functional information to improve GWAS summary statistic imputation
focus
FOCUS: Fine-mapping Of CaUsal gene Sets
focus_paper
TWAS and fine-mapping results from "Probabilistic fine-mapping of transcriptome-wide association studies"
gene_sets
Mendelian disorder gene sets for specific traits, created from mining OMIM for phentoype-specific clinical keywords
h2-gre
Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 2019)
h2gene
hic
hichip
lamp-ld
prca_twas
Repository for prostate cancer TWAS in OncoArray meta-analysis
prs-uncertainty
response
rhoge
Estimate genetic correlation using predicted expression
scripts_collection
A collection of scripts.
sumstats
scripts for checking curated summary stats
tinygwas
tractor-response
Response to "Tractor uses local ancestry to enable the inclusion of admixed individuals in GWAS and to boost power"
transpher
twas30
TWAS association statistics from Mancuso et al AJHG 2017
ukb-pheno-sim
unity
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