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> whoami

I'm a researcher and programmer at the Globe Institute, University of Copenhagen, where I develop new tools for spatial simulations and data analysis in population genetics and ecology.

An important focus of my work is facilitating reproducibility through the design of intuitive, programmable interfaces to complex computational methods. I enjoy thinking about ways to help experts work on hard problems more efficiently while lowering the barrier of entry to novice users.

Previously, I did my PhD in ancient DNA genomics at the Max Planck Institute for Evolutionary Anthropology in Leipzig where I studied the evolutionary histories of Neanderthals, Denisovans, and anatomically modern humans (but also extinct elephants!).

For more details about my work, check out my website at bodkan.net.

If you would like to get in touch, send me an email at [email protected].

Martin Petr's Projects

admixr icon admixr

An R package for reproducible and automated ADMIXTOOLS analyses

arch-finder icon arch-finder

Scan archaic and modern human genomes to get a list of putatively introgressed alleles

archaic-ychr icon archaic-ychr

Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.

bam-caller icon bam-caller

A simple Python CLI program for calling pseudo-haploid genotypes from BAM files

bdkn icon bdkn

A set of personal convenience R functions

demografr icon demografr

Fast and simple simulation-based population genetic inference in R

dotfiles icon dotfiles

Personal collection of configuration files I'm using across various machines (my Macbook Pro, GNU/Linux remote nodes and containers)

hg19-bvalues icon hg19-bvalues

Conversion of McVicker et al. B value coordinates to hg19

ku-popgen2022 icon ku-popgen2022

Lecture notes and materials on simulations for the 2022 popgen course at Copenhagen University

ku-popgen2023 icon ku-popgen2023

Lecture notes and materials on simulations for the 2023 popgen course at Copenhagen University

nea-over-time icon nea-over-time

Source code and Jupyter notebooks for the paper: "The limits of long-term selection against Neandertal introgression"

notebooks icon notebooks

A random collection of exploratory Jupyter notebooks.

probgen2022 icon probgen2022

Interactive code examples from the ProbGen 2022 slendr poster

slendr icon slendr

Population genetic simulations in R 🌍

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