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Brendan Lawlor's Projects

parser icon parser

A parsing library, focused on simplicity and great error messages

phd-paper1 icon phd-paper1

Engineering Bioinformatics: Building Reliability, Performance and Productivity into Bioinformatics Software

picard icon picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

prokka icon prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

scalabase icon scalabase

Dockerfile for basis of scala development environment

snippy icon snippy

:scissors: :zap: Rapid bacterial SNP calling and core genome alignments

snippygubbins icon snippygubbins

Pipeline of snippy and gubbins for performing phylogenomic analysis from fasta file input.

zoom-r24-bitwig-controller icon zoom-r24-bitwig-controller

Bitwig Extension written in Java/Kotlin that allows the use of the Zoom R24 (and 12) as a control surface for Bitwig Studio.

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