bjoyce3 Goto Github PK

planteomedeepsegment_0.1

read_vs_lsstthedocs_mozilla_sprint_2017

Tina Lee and Blake Joyce testing out LSSTtheDocs and ReadtheDocs for the Cyverse documentation update.

registry

The Core Registry of Container Blueprints for the Autamus Build System

resbaz2018

Website for ResBaz 2018 (a polymer-based rewrite of previous websites)

resbaztutorialgit

2020 tutorial

researcher_facing_readthedocs

The repository for UAB Research Computing researcher facing read the docs. https://bjoyce-researcher-facing-readthedocs.readthedocs.io/en/latest/

researchsoftware.org

International RSE website

rnaseqvisualizationtools

Docker container for downstream tools for visualization of RNA-seq analysis.

rse-phenotypes

Contribute your Research Software Engineer (RSE) phenotype!

sci-f.github.io

The Scientific Filesystem Specification and Documentation

scratch

sdsc_summer_institute_2016_joyce

Code from the San Diego Supercomputing Center Summer Institute

simprily

simprily_de_concatenate_output

This app will complete the third step in the SimPrily DE workflow and concatenate all output files into a single file for analysis and assessment.

simprily_de_htfile_setup_app

This app will setup a high-throughput files on the CyVerse Discovery Environment for running the SimPrily workflow for a user defined number of times (e.g. 1000 SimPrily simulations).

singolang

Singularity wrapper in Go

singularity-container-test

A workflow for structure testing of singularity containers

software_carpentry

Software carpentry class repo (R -> Shell -> Git -> R/Atmosphere)

swc_hlt_2017-09-09

SWC repo for HLT NLP human words Linguistics

swc_r_summary_script

synmapfractbiasanalysis

Fractionation bias analysis tool for investigating whole genome duplication gene loss.

titanic_data_exploration

Workshop Jupyter Notebooks for Data Carpentry Workshop

ua_hpc_university_metrics_dashboard

A repository to create an automatic dashboard for HERD, IPEDS, and University of Arizona-specific metrics.

uab_introtopython_analysis_vis

uabrc.github.io

UAB Research Computing Documentation

uafijisegmentation

Repo for code used on UA HPC to segment 3d confocal data in FIJI

usrse.github.io

US RSE umbrella web page

whoi_mom5_docker

Container for deploying the Modular Ocean Model 5 (MOM5) ESM2M model on the WHOI HPC Poseidon.

workshop-template

Template for workshop websites.

workshop-tools